Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO011793 has 16 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 16 records out of 16 total, starting on record 1, ending on 16

gene_id species description comment strand chr outlier
AL1G19100 aly name=Al_scaffold_0001_1886;pid=880119;prot=eq;tid=911632 - scaffold_1 No
AL2G22480 aly name=fgenesh2_kg.2__1630__AT1G73640.1;pid=476500;prot=eq;tid=476500 + scaffold_2 No
AT1G18200 ath RAB GTPase homolog A6B (RABA6b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A6A (TAIR:AT1G73640.1); Has 27350 Blast hits to 27317 proteins in 747 species: Archae - 26; Bacteria - 153; Metazoa - 14378; Fungi - 3650; Plants - 3208; Viruses - 20; Other Eukaryotes - 5915 (source: NCBI BLink).;RAB GTPase homolog A6B transcript=eq;prot=eq; - 1 No
AT1G73640 ath RAB GTPase homolog A6A (RABA6a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A6B (TAIR:AT1G18200.1); Has 27212 Blast hits to 27171 proteins in 728 species: Archae - 24; Bacteria - 131; Metazoa - 14579; Fungi - 3674; Plants - 3000; Viruses - 20; Other Eukaryotes - 5784 (source: NCBI BLink).;RAB GTPase homolog A6A transcript=eq;prot=eq; + 1 No
CP00003G04050 cpa name=evm.TU.supercontig_3.405;pid=evm.TU.supercontig_3.405;prot=eq;transcript=eq + supercontig_3 No
FV5G16790 fve Ras-related protein Rab2BV (putative) transcript=eq;prot=eq;pid=gene09393 + LG5 No
GM05G33970 gma 05 pid=16260609;transcript=eq;prot=eq;name=Glyma05g33970.1 - Gm05 No
GM07G11420 gma 07 pid=16266960;transcript=eq;prot=eq;name=Glyma07g11420.1 + Gm07 No
GM08G05800 gma 08 pid=16270113;transcript=eq;prot=eq;name=Glyma08g05800.1 - Gm08 No
LJ4G036930 lja prot=eq;transcript=eq;scaffold=CM0042;name=chr4.CM0042.2250.nc - chr4 No
MD00G452960 mdo transcript=eq;prot=eq;pid=MDP0000314666;tid=MDP0000314666;contig=MDC020883.180 + MDC020883.180 No
ME06631G00310 mes PACid=17968095;RNAname=cassava4.1_025386m;GeneName=cassava4.1_025386m.g;transcript=eq;prot=eq - scaffold06631 No
MT8G107070 mtr Ras-related protein Rab-11A (AHRD V1 ***- P62494); contains Interpro domain(s) IPR015595 Rab11-related transcript=eq;prot=eq;pid=Medtr8g107070.1; - 8 No
PT15G03500 ptr PACid=17329613;name=POPTR_0015s04450;alias=pt001029m,estExt_fgenesh4_pm.C_LG_XV0124; transcript=eq;prot=eq;protein_id=17329613; - scaffold_15 No
RC28134G00010 rco name=28134.m000170;gene=28134.t000002;note=28134.t000002;transcript=eq;prot=eq + 28134 No
VV17G07060 vvi name=GSVIVG01008419001; transcript=eq;prot=eq;name=GSVIVG01008419001;pid=GSVIVG01008419001;tid=GSVIVT01008419001; + chr17 No
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