Sub-family  

Parent family
HOM000363
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO011521 has 17 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 1, showing 17 records out of 17 total, starting on record 1, ending on 17

gene_id species description comment strand chr outlier
AL8G03300 aly name=fgenesh1_pg.C_scaffold_8000271;pid=356484;prot=eq;tid=356484 - scaffold_8 No
AT5G45300 ath beta-amylase 2 (BMY2); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 1218 Blast hits to 1198 proteins in 187 species: Archae - 0; Bacteria - 92; Metazoa - 210; Fungi - 10; Plants - 824; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).;beta-amylase 2 transcript=eq;prot=eq; + 5 No
BD3G02800 bdi Glycosyl hydrolase (GH), subfamily GH14 pid=Bradi3g02800.1;tid=Bradi3g02800.1;GeneName=Bradi3g02800;Name=BdGH14_8;transcript=eq;prot=eq + Bd3 No
FV5G33330 fve Beta-amylase (probable) transcript=eq;prot=eq;pid=gene27696 + LG5 No
GM01G35500 gma 01 pid=16245258;transcript=eq;prot=eq;name=Glyma01g35500.1 + Gm01 No
GM09G35070 gma 09 pid=16277241;transcript=eq;prot=eq;name=Glyma09g35070.1 + Gm09 No
LJ2G021000 lja prot=eq;transcript=eq;scaffold=CM0803;name=chr2.CM0803.520.nc + chr2 No
MD06G001300 mdo transcript=eq;prot=eq;pid=MDP0000262498;tid=MDP0000262498;contig=MDC038938.9 + 6 No
MT5G026210 mtr Beta-amylase (AHRD V1 **** O22585); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core transcript=eq;prot=eq;pid=Medtr5g026210.1; - 5 No
OS02G03690 osa beta%2Damylase, putative, expressed transcript=eq;prot=eq; + 2 No
OSINDICA_02G03020 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC012398; + Chr02 No
PT03G09620 ptr PACid=17330060;name=POPTR_0003s10570;alias=pt022882m,gw1.III.1119.1; transcript=eq;prot=eq;protein_id=17330060; - scaffold_3 No
RC29827G01060 rco name=29827.m002636;gene=29827.t000109;note=29827.t000109;transcript=eq;prot=eq - 29827 No
SB04G002450 sbi 4 prot=eq;pid=5037484;tid=5037484 + chr_4 No
TC03G031060 tca RNAname=Tc03_t031060;GeneName=Tc03_g031060;transcript=eq;prot=eq - Tc03 No
VV02G09430 vvi name=GSVIVG01036911001; transcript=eq;prot=eq;name=GSVIVG01036911001;pid=GSVIVG01036911001;tid=GSVIVT01036911001; + chr2 No
ZM04G40810 zma name=GRMZM2G069486;tid=GRMZM2G069486_T01;pid=GRMZM2G069486_P01;transcript=eq;prot=eq; + 4 No
<< previous
next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier