Sub-family  

Parent family
HOM001239
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO011459 has 17 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 1, showing 17 records out of 17 total, starting on record 1, ending on 17

gene_id species description comment strand chr outlier
AL6G24980 aly name=scaffold_602590.1;pid=910533;prot=eq;tid=942046 + scaffold_6 No
AT5G10625 ath BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G24860 ath encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.;flowering promoting factor 1 transcript=eq;prot=eq; + 5 No
CP01312G00010 cpa name=evm.TU.supercontig_1312.1;pid=evm.TU.supercontig_1312.1;prot=eq;transcript=eq + supercontig_1312 No
FV6G29850 fve Transcription factor HIVEP3 (KBP-1) (similar to) transcript=eq;prot=eq;pid=gene15480 + LG6 No
GM04G07900 gma 04 pid=16255246;transcript=eq;prot=eq;name=Glyma04g07900.1 + Gm04 No
GM14G17260 gma 14 pid=16295617;transcript=eq;prot=eq;name=Glyma14g17260.1 + Gm14 No
GM17G29720 gma 17 pid=16306597;transcript=eq;prot=eq;name=Glyma17g29720.1 + Gm17 No
LJ5G008570 lja prot=eq;transcript=eq;scaffold=CM0072;name=chr5.CM0072.380.nd + chr5 No
MD00G199360 mdo transcript=eq;prot=eq;pid=MDP0000328563;tid=MDP0000328563;contig=MDC008568.203 + MDC008568.203 No
MD15G004950 mdo transcript=eq;prot=eq;pid=MDP0000284776;tid=MDP0000284776;contig=MDC007350.843 - 15 No
ME03874G00100 mes PACid=17960914;RNAname=cassava4.1_023339m;GeneName=cassava4.1_023339m.g;transcript=eq;prot=eq - scaffold03874 No
PT06G27390 ptr PACid=17315009;name=POPTR_0006s29100;alias=pt019162m,fgenesh4_pm.C_scaffold_147000018; transcript=eq;prot=eq;protein_id=17315009; - scaffold_6 No
PT18G03590 ptr PACid=17344206;name=POPTR_0018s03780;alias=pt009288m,eugene3.01930011,Pt-FPF1.1; transcript=eq;prot=eq;protein_id=17344206; - scaffold_18 No
RC28226G00100 rco name=28226.m000840;gene=28226.t000010;note=28226.t000010;transcript=eq;prot=eq - 28226 No
TC09G000530 tca RNAname=Tc09_t000530;GeneName=Tc09_g000530;transcript=eq;prot=eq + Tc09 No
VV04G09500 vvi name=GSVIVG01035540001; transcript=eq;prot=eq;name=GSVIVG01035540001;pid=GSVIVG01035540001;tid=GSVIVT01035540001; + chr4 No
<< previous
next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier