Sub-family  

Parent family
HOM002002
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)



The gene family ORTHO011239 has 17 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 17 records out of 17 total, starting on record 1, ending on 17

gene_id species description comment strand chr outlier
AL1G46500 aly name=fgenesh2_kg.1__4246__AT1G51745.2;pid=474292;prot=eq;tid=474292 + scaffold_1 No
AT1G51745 ath Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 543 Blast hits to 394 proteins in 123 species: Archae - 0; Bacteria - 201; Metazoa - 137; Fungi - 38; Plants - 92; Viruses - 3; Other Eukaryotes - 72 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; + 1 No
AT3G21295 ath Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G51745.1); Has 561 Blast hits to 428 proteins in 108 species: Archae - 2; Bacteria - 226; Metazoa - 60; Fungi - 64; Plants - 94; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; + 3 No
CP00131G00280 cpa name=evm.TU.supercontig_131.28;pid=evm.TU.supercontig_131.28;prot=eq;transcript=eq - supercontig_131 No
FV4G21270 fve hypothetical protein transcript=eq;prot=eq;pid=gene23118 + LG4 No
GM07G01530 gma 07 pid=16265791;transcript=eq;prot=eq;name=Glyma07g01530.1 + Gm07 No
LJ4G007120 lja partial;prot=eq;transcript=eq;scaffold=CM0692;name=chr4.CM0692.600.nd - chr4 No
MD00G187970 mdo transcript=eq;prot=eq;pid=MDP0000239108;tid=MDP0000239108;contig=MDC008082.89 - MDC008082.89 No
MD00G318190 mdo transcript=eq;prot=eq;pid=MDP0000242107;tid=MDP0000242107;contig=MDC013483.320 - MDC013483.320 No
MD09G017430 mdo transcript=eq;prot=eq;pid=MDP0000198534;tid=MDP0000198534;contig=MDC013483.317 + 9 No
ME12525G00940 mes PACid=17976031;RNAname=cassava4.1_002145m;GeneName=cassava4.1_002145m.g;transcript=eq;prot=eq + scaffold12525 No
PT01G19290 ptr PACid=17309054;name=POPTR_0001s19480;alias=pt037602m; transcript=eq;prot=eq;protein_id=17309054; + scaffold_1 No
PT03G03020 ptr PACid=17330346;name=POPTR_0003s03970;alias=pt022876m; transcript=eq;prot=eq;protein_id=17330346; + scaffold_3 No
RC30146G00040 rco name=30146.m003427;gene=30146.t000004;note=30146.t000004;transcript=eq;prot=eq + 30146 No
TC06G009230 tca RNAname=Tc06_t009230;GeneName=Tc06_g009230;transcript=eq;prot=eq - Tc06 No
VV09G03540 vvi name=GSVIVG01016893001; transcript=eq;prot=eq;name=GSVIVG01016893001;pid=GSVIVG01016893001;tid=GSVIVT01016893001; + chr9 No
VV09G03550 vvi name=GSVIVG01016894001; transcript=eq;prot=eq;name=GSVIVG01016894001;pid=GSVIVG01016894001;tid=GSVIVT01016894001; + chr9 No
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