Sub-family  

Parent family
HOM000175
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO010951 has 18 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18

gene_id species description comment strand chr outlier
AL7G38990 aly name=scaffold_704114.1;pid=916372;prot=eq;tid=947885 + scaffold_7 No
AT1G08880 ath Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.;Histone superfamily protein transcript=eq;prot=eq; - 1 No
AT1G54690 ath Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10–20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.;gamma histone variant H2AX transcript=eq;prot=eq; - 1 No
CP00084G01160 cpa name=evm.TU.supercontig_84.116;pid=evm.TU.supercontig_84.116;prot=eq;transcript=eq - supercontig_84 No
FV6G06930 fve Probable histone H2AXb (putative) transcript=eq;prot=eq;pid=gene22354 + LG6 No
MD00G213340 mdo transcript=eq;prot=eq;pid=MDP0000189688;tid=MDP0000189688;contig=MDC009217.264 + MDC009217.264 No
MD04G017360 mdo transcript=eq;prot=eq;pid=MDP0000286160;tid=MDP0000286160;contig=MDC011331.169 + 4 No
ME11998G01530 mes PACid=17986261;RNAname=cassava4.1_018611m;GeneName=cassava4.1_018611m.g;transcript=eq;prot=eq + scaffold11998 No
MT7G108320 mtr Histone H2A (AHRD V1 ***- C6SV65_SOYBN); contains Interpro domain(s) IPR002119 Histone H2A transcript=eq;prot=eq;pid=Medtr7g108320.1; - 7 No
OS12G34510 osa Core histone H2A%2FH2B%2FH3%2FH4 domain containing protein, putative, expressed transcript=eq;prot=eq; - 12 No
OSINDICA_12G23150 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC033280; - Chr12 No
RC30128G00970 rco name=30128.m008694;gene=30128.t000155;note=30128.t000155;transcript=eq;prot=eq - 30128 No
SB08G016830 sbi 8 prot=eq;pid=5045146;tid=5045146 - chr_8 No
SM00000G08070 smo proteinId=73637;transcriptId=73637;name=e_gw1.0.964.1;transcript=eq;prot=eq - scaffold_0 No
TC01G029250 tca RNAname=Tc01_t029250;GeneName=Tc01_g029250;transcript=eq;prot=eq + Tc01 No
VC00010G01470 vca name=estExt_Genewise1Plus.C_100176;pid=80244;prot=eq;tid=80244 - scaffold_10 No
VV07G04140 vvi name=GSVIVG01011034001; transcript=eq;prot=eq;name=GSVIVG01011034001;pid=GSVIVG01011034001;tid=GSVIVT01011034001; + chr7 No
ZM10G05210 zma Histone H2A name=GRMZM5G883764;tid=GRMZM5G883764_T02;pid=GRMZM5G883764_P02;transcript=eq;prot=eq; + 10 No
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