Sub-family  

Parent family
HOM000483
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO010779 has 18 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18

gene_id species description comment strand chr outlier
AL4G34980 aly name=scaffold_403653.1;pid=904152;prot=eq;tid=935665 + scaffold_4 No
AL5G32890 aly name=fgenesh2_kg.5__2692__AT3G61950.1;pid=486700;prot=eq;tid=486700 + scaffold_5 No
AT2G46810 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1496 Blast hits to 1481 proteins in 142 species: Archae - 0; Bacteria - 20; Metazoa - 45; Fungi - 33; Plants - 1336; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 2 No
AT3G61950 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G46810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 3 No
CP00057G00820 cpa name=evm.TU.supercontig_57.82;pid=evm.TU.supercontig_57.82;prot=eq;transcript=eq - supercontig_57 No
FV7G04210 fve Transcription factor bHLH57 (bHLH 57) (probable) transcript=eq;prot=eq;pid=gene18608 - LG7 No
FV7G09500 fve Transcription factor bHLH57 (bHLH 57) (probable) transcript=eq;prot=eq;pid=gene18888 - LG7 No
GM07G05500 gma 07 pid=16266295;transcript=eq;prot=eq;name=Glyma07g05500.1 - Gm07 No
GM16G02020 gma 16 pid=16301166;transcript=eq;prot=eq;name=Glyma16g02020.1 - Gm16 No
LJ3G023850 lja prot=eq;transcript=eq;scaffold=CM0208;name=chr3.CM0208.290.nc + chr3 No
MD01G007400 mdo transcript=eq;prot=eq;pid=MDP0000321049;tid=MDP0000321049;contig=MDC005357.470 + 1 No
MD07G014550 mdo transcript=eq;prot=eq;pid=MDP0000829998;tid=MDP0000829998;contig=MDC015632.161 + 7 No
ME03581G00120 mes PACid=17975680;RNAname=cassava4.1_009158m;GeneName=cassava4.1_009158m.g;transcript=eq;prot=eq - scaffold03581 No
ME07571G00150 mes PACid=17963703;RNAname=cassava4.1_029469m;GeneName=cassava4.1_029469m.g;transcript=ne;prot=eq + scaffold07571 No
PT14G10000 ptr PACid=17336289;name=POPTR_0014s10190;alias=pt035657m; transcript=eq;prot=eq;protein_id=17336289; + scaffold_14 No
RC30076G00200 rco name=30076.m004456;gene=30076.t000020;note=30076.t000020;transcript=eq;prot=eq + 30076 No
TC01G033610 tca RNAname=Tc01_t033610;GeneName=Tc01_g033610;transcript=eq;prot=eq - Tc01 No
VV15G07510 vvi name=GSVIVG01027446001; transcript=eq;prot=eq;name=GSVIVG01027446001;pid=GSVIVG01027446001;tid=GSVIVT01027446001; - chr15 No
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