Sub-family  

Parent family
HOM000075
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)



The gene family ORTHO010693 has 18 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18

gene_id species description comment strand chr outlier
AL3G07730 aly name=Al_scaffold_0003_757;pid=872116;prot=eq;tid=903629 - scaffold_3 No
AT3G07340 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2639 Blast hits to 2308 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 52; Plants - 2177; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 3 No
CP00008G00980 cpa name=evm.TU.supercontig_8.98;pid=evm.TU.supercontig_8.98;prot=eq;transcript=eq + supercontig_8 No
FV2G13760 fve Transcription factor bHLH78 (bHLH 78) (probable) transcript=eq;prot=eq;pid=gene17430 + LG2 No
GM03G21770 gma 03 pid=16252006;transcript=eq;prot=eq;name=Glyma03g21770.1 - Gm03 No
GM08G46040 gma 08 pid=16273988;transcript=eq;prot=eq;name=Glyma08g46040.1 + Gm08 No
GM16G10620 gma 16 pid=16302083;transcript=eq;prot=eq;name=Glyma16g10620.1 + Gm16 No
GM18G32560 gma 18 pid=16309470;transcript=eq;prot=eq;name=Glyma18g32560.1 + Gm18 No
LJ0G463580 lja prot=eq;transcript=eq;scaffold=LjT09O11;name=LjT09O11.110.nd - chr0 No
LJ3G008230 lja partial;prot=eq;transcript=eq;scaffold=CM0241;name=chr3.CM0241.190.nd + chr3 No
MD05G016620 mdo transcript=eq;prot=eq;pid=MDP0000837139;tid=MDP0000837139;contig=MDC019255.177 - 5 No
MD10G011430 mdo transcript=eq;prot=eq;pid=MDP0000205113;tid=MDP0000205113;contig=MDC015316.131 + 10 No
ME06158G00410 mes PACid=17987032;RNAname=cassava4.1_004810m;GeneName=cassava4.1_004810m.g;transcript=eq;prot=eq + scaffold06158 No
ME08626G00010 mes PACid=17993063;RNAname=cassava4.1_004576m;GeneName=cassava4.1_004576m.g;transcript=eq;prot=eq + scaffold08626 No
MT8G012290 mtr BHLH transcription factor (AHRD V1 *-** B6UBF8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding transcript=eq;prot=eq;pid=Medtr8g012290.1; + 8 No
PT02G24610 ptr PACid=17322629;name=POPTR_0002s24990;alias=pt020201m,eugene3.00002538; transcript=eq;prot=eq;protein_id=17322629; - scaffold_2 No
RC29447G00020 rco name=29447.m000032;gene=29447.t000002;note=29447.t000002;transcript=eq;prot=eq - 29447 No
TC01G021000 tca RNAname=Tc01_t021000;GeneName=Tc01_g021000;transcript=eq;prot=eq + Tc01 No
<< previous
next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier