Sub-family  

Parent family
HOM000099
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO010613 has 18 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18

gene_id species description comment strand chr outlier
AL1G30040 aly name=scaffold_103229.1;pid=890435;prot=eq;tid=921948 - scaffold_1 No
AL4G19370 aly name=scaffold_401998.1;pid=902497;prot=eq;tid=934010 - scaffold_4 No
AT1G29160 ath Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G34140.1); Has 1076 Blast hits to 1071 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1071; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;Dof-type zinc finger DNA-binding family protein transcript=eq;prot=eq; - 1 No
AT2G34140 ath Dof-type zinc finger DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT1G29160.1); Has 1074 Blast hits to 1069 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1069; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;Dof-type zinc finger DNA-binding family protein transcript=eq;prot=eq; - 2 No
FV3G14040 fve Dof zinc finger protein DOF1.5 (AtDOF1.5) (putative) transcript=eq;prot=eq;pid=gene29662 - LG3 No
GM05G29090 gma 05 pid=16260016;transcript=eq;prot=eq;name=Glyma05g29090.1 - Gm05 No
LJ0G081710 lja prot=eq;transcript=eq;scaffold=LjSGA_027183;name=LjSGA_027183.1 - LjSGA_027183 No
LJ4G028290 lja prot=eq;transcript=eq;scaffold=CM0399;name=chr4.CM0399.100.nc + chr4 No
MD05G005420 mdo transcript=eq;prot=eq;pid=MDP0000404665;tid=MDP0000404665;contig=MDC019843.215 - 5 No
MD10G022450 mdo transcript=eq;prot=eq;pid=MDP0000156388;tid=MDP0000156388;contig=MDC002128.156 + 10 No
ME02929G00010 mes PACid=17987858;RNAname=cassava4.1_018110m;GeneName=cassava4.1_018110m.g;transcript=eq;prot=eq + scaffold02929 No
ME04890G00020 mes PACid=17969580;RNAname=cassava4.1_028393m;GeneName=cassava4.1_028393m.g;transcript=eq;prot=eq + scaffold04890 No
MRCC299_11G03520 mrcc299 name=EuGene.1100010355;pid=62569;prot=eq;tid=62569;transcript=eq - Chr_11 No
PT04G05390 ptr PACid=17303319;name=POPTR_0004s05580;alias=pt007378m,Pt-DOF2.2,gw1.IV.2744.1; transcript=eq;prot=eq;protein_id=17303319; - scaffold_4 No
PT11G07210 ptr PACid=17305415;name=POPTR_0011s07400;alias=pt014691m; transcript=eq;prot=eq;protein_id=17305415; + scaffold_11 No
RC29900G00840 rco name=29900.m001624;gene=29900.t000086;note=29900.t000086;transcript=eq;prot=eq - 29900 No
TC06G014380 tca RNAname=Tc06_t014380;GeneName=Tc06_g014380;transcript=eq;prot=eq + Tc06 No
VV10G02140 vvi name=GSVIVG01021212001; transcript=eq;prot=eq;name=GSVIVG01021212001;pid=GSVIVG01021212001;tid=GSVIVT01021212001; - chr10 No
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