Sub-family  

Parent family
HOM000216
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO010583 has 18 genes in 15 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18

gene_id species description comment strand chr outlier
AL1G15190 aly name=scaffold_101615.1;pid=888821;prot=eq;tid=920334 - scaffold_1 No
AT1G14440 ath homeobox protein 31 (HB31); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein, Cys/His-rich dimerisation domain (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 21 (TAIR:AT2G02540.1); Has 602 Blast hits to 562 proteins in 67 species: Archae - 0; Bacteria - 10; Metazoa - 45; Fungi - 3; Plants - 505; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).;homeobox protein 31 transcript=eq;prot=eq; - 1 No
BD4G21160 bdi pid=Bradi4g21160.1;tid=Bradi4g21160.1;GeneName=Bradi4g21160;transcript=eq;prot=eq + Bd4 No
CP00173G00050 cpa name=evm.TU.supercontig_173.5;pid=evm.TU.supercontig_173.5;prot=eq;transcript=eq + supercontig_173 No
FV5G26720 fve ZF-HD homeobox protein At5g65410 (probable) transcript=eq;prot=eq;pid=gene29103 - LG5 No
GM07G40190 gma 07 pid=16269369;transcript=eq;prot=eq;name=Glyma07g40190.1 + Gm07 No
GM17G00590 gma 17 pid=16303931;transcript=eq;prot=eq;name=Glyma17g00590.1 - Gm17 No
MD08G022950 mdo transcript=eq;prot=eq;pid=MDP0000372694;tid=MDP0000372694;contig=MDC000567.248 - 8 No
MD15G036450 mdo transcript=eq;prot=eq;pid=MDP0000249735;tid=MDP0000249735;contig=MDC005190.585 - 15 No
ME09151G00240 mes PACid=17964800;RNAname=cassava4.1_013112m;GeneName=cassava4.1_013112m.g;transcript=ne;prot=eq - scaffold09151 No
OS11G13930 osa ZF%2DHD protein dimerisation region containing protein, expressed transcript=eq;prot=eq; - 11 No
OSINDICA_11G10610 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC045422; - Chr11 No
PT03G00230 ptr PACid=17322519;name=POPTR_0003s00800;alias=pt024695m; transcript=eq;prot=eq;protein_id=17322519; + scaffold_3 No
PT04G22720 ptr PACid=17327272;name=POPTR_0004s23860;alias=pt007915m; transcript=eq;prot=eq;protein_id=17327272; - scaffold_4 No
RC29806G00520 rco name=29806.m000981;gene=29806.t000052;note=29806.t000052;transcript=eq;prot=eq - 29806 No
SB05G007050 sbi 5 prot=eq;pid=5039962;tid=5039962 + chr_5 No
TC06G001490 tca RNAname=Tc06_t001490;GeneName=Tc06_g001490;transcript=eq;prot=eq - Tc06 No
ZM04G03470 zma hypothetical protein LOC100384670 (LOC100384670), mRNA name=GRMZM2G068330;tid=GRMZM2G068330_T01;pid=GRMZM2G068330_P01;transcript=eq;prot=eq; - 4 No
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