Sub-family  

Parent family
HOM000448
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)



The gene family ORTHO010562 has 18 genes in 12 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 18 records out of 18 total, starting on record 1, ending on 18

gene_id species description comment strand chr outlier
AL1G07930 aly name=fgenesh1_pg.C_scaffold_1000684;pid=334119;prot=eq;tid=334119 - scaffold_1 No
AT1G08290 ath WIP domain protein 3 (WIP3); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 40394 Blast hits to 17903 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 38493; Fungi - 119; Plants - 685; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink).;WIP domain protein 3 transcript=eq;prot=eq; - 1 No
CP35924G00010 cpa name=evm.TU.contig_35924.1;pid=evm.TU.contig_35924.1;prot=eq;transcript=eq + contig_35924 No
FV2G44190 fve Protein TRANSPARENT TESTA 1 (similar to) transcript=eq;prot=eq;pid=gene22042 + LG2 No
GM11G19060 gma 11 pid=16284301;transcript=eq;prot=eq;name=Glyma11g19060.1 + Gm11 No
GM12G09400 gma 12 pid=16286965;transcript=eq;prot=eq;name=Glyma12g09400.1 - Gm12 No
GM12G30930 gma 12 pid=16288462;transcript=eq;prot=eq;name=Glyma12g30930.1 - Gm12 No
GM13G39370 gma 13 pid=16293159;transcript=eq;prot=eq;name=Glyma13g39370.1 + Gm13 No
LJ3G029440 lja partial;prot=eq;transcript=eq;scaffold=CM1144;name=chr3.CM1144.10.nc + chr3 No
MD08G013970 mdo transcript=eq;prot=eq;pid=MDP0000131949;tid=MDP0000131949;contig=MDC020930.174 + 8 No
MD13G021570 mdo transcript=eq;prot=eq;pid=MDP0000300013;tid=MDP0000300013;contig=MDC013127.437 - 13 No
ME02973G00050 mes PACid=17983844;RNAname=cassava4.1_025979m;GeneName=cassava4.1_025979m.g;transcript=eq;prot=eq - scaffold02973 No
ME05859G00650 mes PACid=17973548;RNAname=cassava4.1_011164m;GeneName=cassava4.1_011164m.g;transcript=ne;prot=eq - scaffold05859 No
MT2G086230 mtr Protein TRANSPARENT TESTA 1 (AHRD V1 **-- Q8VWG3); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type transcript=eq;prot=eq;pid=Medtr2g086230.1; - 2 No
PT04G18320 ptr PACid=17342026;name=POPTR_0004s19460;alias=pt006810m; transcript=eq;prot=eq;protein_id=17342026; + scaffold_4 No
PT09G14400 ptr PACid=17339634;name=POPTR_0009s14590;alias=pt004806m; transcript=eq;prot=eq;protein_id=17339634; + scaffold_9 No
RC30055G00120 rco name=30055.m001542;gene=30055.t000012;note=30055.t000012;transcript=eq;prot=eq - 30055 No
TC09G027980 tca RNAname=Tc09_t027980;GeneName=Tc09_g027980;transcript=eq;prot=eq + Tc09 No
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