Sub-family  

Parent family
HOM000075
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO010095 has 19 genes in 15 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 19 records out of 19 total, starting on record 1, ending on 19

gene_id species description comment strand chr outlier
AL4G29470 aly name=scaffold_403077.1;pid=903576;prot=eq;tid=935089 - scaffold_4 No
AT2G42280 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G51140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 2 No
BD3G39927 bdi pid=Bradi3g39927.1;tid=Bradi3g39927.1;GeneName=Bradi3g39927;transcript=eq;prot=eq + Bd3 No
CP00085G01160 cpa name=evm.TU.supercontig_85.116;pid=evm.TU.supercontig_85.116;prot=eq;transcript=eq - supercontig_85 No
FV6G44980 fve Transcription factor bHLH130 (bHLH 130) (probable) transcript=eq;prot=eq;pid=gene00545 - LG6 No
GM02G29830 gma 02 pid=16248807;transcript=eq;prot=eq;name=Glyma02g29830.1 + Gm02 No
GM10G12150 gma 10 pid=16279313;transcript=eq;prot=eq;name=Glyma10g12150.1 - Gm10 No
ME00823G00380 mes PACid=17993729;RNAname=cassava4.1_010104m;GeneName=cassava4.1_010104m.g;transcript=eq;prot=eq - scaffold00823 No
ME03602G00460 mes PACid=17979952;RNAname=cassava4.1_010046m;GeneName=cassava4.1_010046m.g;transcript=eq;prot=eq - scaffold03602 No
OS08G39630 osa helix%2Dloop%2Dhelix DNA%2Dbinding domain containing protein, expressed transcript=eq;prot=eq; + 8 No
OSINDICA_08G38040 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027237; + Chr08 No
PT06G05450 ptr PACid=17343797;name=POPTR_0006s05640;alias=pt018064m; transcript=eq;prot=eq;protein_id=17343797; + scaffold_6 No
PT16G04910 ptr PACid=17305937;name=POPTR_0016s05100;alias=pt003172m; transcript=eq;prot=eq;protein_id=17305937; - scaffold_16 No
RC29216G00130 rco name=29216.m000261;gene=29216.t000013;note=29216.t000013;transcript=eq;prot=eq - 29216 No
SB07G027810 sbi 7 prot=eq;pid=5044196;tid=5044196 - chr_7 No
TC05G018170 tca RNAname=Tc05_t018170;GeneName=Tc05_g018170;transcript=eq;prot=eq + Tc05 No
VV08G08030 vvi name=GSVIVG01033356001; transcript=eq;prot=eq;name=GSVIVG01033356001;pid=GSVIVG01033356001;tid=GSVIVT01033356001; - chr8 No
ZM02G36970 zma name=GRMZM2G142932;tid=GRMZM2G142932_T01;pid=GRMZM2G142932_P01;transcript=eq;prot=eq; - 2 No
ZM07G24050 zma DNA binding protein name=GRMZM2G153454;tid=GRMZM2G153454_T01;pid=GRMZM2G153454_P01;transcript=eq;prot=eq; + 7 No
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