Sub-family  

Parent family
HOM004209
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO009909 has 19 genes in 15 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 1, showing 19 records out of 19 total, starting on record 1, ending on 19

gene_id species description comment strand chr outlier
AL1G45100 aly name=fgenesh2_kg.1__4147__AT1G50620.1;pid=474193;prot=eq;tid=474193 + scaffold_1 No
AT1G50620 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G20280.1); Has 3714 Blast hits to 3101 proteins in 414 species: Archae - 4; Bacteria - 443; Metazoa - 1736; Fungi - 538; Plants - 319; Viruses - 13; Other Eukaryotes - 661 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; + 1 No
CP00012G02390 cpa name=evm.TU.supercontig_12.239;pid=evm.TU.supercontig_12.239;prot=eq;transcript=eq - supercontig_12 No
CP00012G02420 cpa name=evm.TU.supercontig_12.242;pid=evm.TU.supercontig_12.242;prot=eq;transcript=eq - supercontig_12 No
FV3G26340 fve PHD finger protein At3g20280 (probable) transcript=eq;prot=eq;pid=gene03487 - LG3 No
GM02G46490 gma 02 pid=16250406;transcript=eq;prot=eq;name=Glyma02g46490.1 - Gm02 No
GM14G02150 gma 14 pid=16294054;transcript=eq;prot=eq;name=Glyma14g02150.1 + Gm14 No
MD03G016630 mdo transcript=eq;prot=eq;pid=MDP0000516935;tid=MDP0000516935;contig=MDC000877.176 + 3 No
MD11G017310 mdo transcript=eq;prot=eq;pid=MDP0000249802;tid=MDP0000249802;contig=MDC012013.303 + 11 No
ME03332G00180 mes PACid=17967497;RNAname=cassava4.1_001574m;GeneName=cassava4.1_001574m.g;transcript=eq;prot=eq - scaffold03332 No
MT5G093940 mtr PHD finger protein At3g20280 (AHRD V1 *-*- Q5PNS0); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type transcript=eq;prot=eq;pid=Medtr5g093940.1; - 5 No
PP00032G01510 ppa NULL name=estExt_fgenesh1_pg.C_320151,pid=161409,prot=eq,tid=161409 - scaffold_32 No
PP00094G00240 ppa NULL name=fgenesh1_pg.scaffold_94000033,pid=81336,prot=eq,tid=81336 - scaffold_94 No
PT01G36180 ptr PACid=17335189;name=POPTR_0001s36940;alias=pt037497m,fgenesh4_pg.C_LG_I002807; transcript=eq;prot=eq;protein_id=17335189; + scaffold_1 No
RC29640G00140 rco name=29640.m000417;gene=29640.t000015;note=29640.t000015;transcript=eq;prot=eq - 29640 No
SB10G011813 sbi 10 prot=eq;pid=5031440;tid=5031440 - chr_10 No
SM00004G01670 smo proteinId=405576;transcriptId=405576;name=fgenesh2_pg.C_scaffold_4000150;transcript=eq;prot=eq + scaffold_4 No
TC07G002470 tca RNAname=Tc07_t002470;GeneName=Tc07_g002470;transcript=eq;prot=eq + Tc07 No
VV19G11180 vvi name=GSVIVG01037732001; transcript=eq;prot=eq;name=GSVIVG01037732001;pid=GSVIVG01037732001;tid=GSVIVT01037732001; - chr19 No
<< previous
next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier