Sub-family  

Parent family
HOM001211
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO009901 has 19 genes in 13 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 19 records out of 19 total, starting on record 1, ending on 19

gene_id species description comment strand chr outlier
AL1G38960 aly name=Al_scaffold_0001_3838;pid=882071;prot=eq;tid=913584 + scaffold_1 No
AT1G43770 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G16680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; + 1 No
CP00049G00440 cpa name=evm.TU.supercontig_49.44;pid=evm.TU.supercontig_49.44;prot=eq;transcript=eq + supercontig_49 No
CP00049G00460 cpa name=evm.TU.supercontig_49.46;pid=evm.TU.supercontig_49.46;prot=eq;transcript=eq + supercontig_49 No
FV0G25310 fve hypothetical protein transcript=eq;prot=eq;pid=gene16547 - scf0513168 No
FV3G40660 fve Zinc finger protein 509 (probable) transcript=eq;prot=eq;pid=gene07705 + LG3 No
GM06G33590 gma 06 pid=16264220;transcript=eq;prot=eq;name=Glyma06g33590.1 - Gm06 No
GM09G23090 gma 09 pid=16276032;transcript=eq;prot=eq;name=Glyma09g23090.1 + Gm09 No
MD00G122080 mdo transcript=eq;prot=eq;pid=MDP0000174950;tid=MDP0000174950;contig=MDC005202.551 + MDC005202.551 No
MD01G013800 mdo transcript=eq;prot=eq;pid=MDP0000279314;tid=MDP0000279314;contig=MDC006217.206 - 1 No
MD01G013810 mdo transcript=eq;prot=eq;pid=MDP0000177310;tid=MDP0000177310;contig=MDC006217.262 - 1 No
ME06688G00370 mes PACid=17968670;RNAname=cassava4.1_026615m;GeneName=cassava4.1_026615m.g;transcript=eq;prot=eq - scaffold06688 No
ME06948G00290 mes PACid=17973668;RNAname=cassava4.1_022818m;GeneName=cassava4.1_022818m.g;transcript=eq;prot=eq + scaffold06948 No
MT2G006220 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr2g006220.1; - 2 No
PT05G20030 ptr PACid=17339980;name=POPTR_0005s21170;alias=pt032833m,fgenesh4_pg.C_LG_V001073; transcript=eq;prot=eq;protein_id=17339980; - scaffold_5 No
RC27985G00100 rco name=27985.m000848;gene=27985.t000011;note=27985.t000011;transcript=eq;prot=eq + 27985 No
SB08G003890 sbi 8 prot=eq;pid=5044564;tid=5044564 - chr_8 No
TC00G072350 tca RNAname=Tc00_t072350;GeneName=Tc00_g072350;transcript=eq;prot=eq - Tc00 No
VV18G00380 vvi name=GSVIVG01001662001; transcript=eq;prot=eq;name=GSVIVG01001662001;pid=GSVIVG01001662001;tid=GSVIVT01001662001; - chr18 No
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