Sub-family  

Parent family
HOM000342
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO009846 has 19 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 19 records out of 19 total, starting on record 1, ending on 19

gene_id species description comment strand chr outlier
AL1G08490 aly name=fgenesh2_kg.1__912__AT1G08845.1;pid=470958;prot=eq;tid=470958 + scaffold_1 No
AT1G08845 ath Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT3G20230.1); Has 251 Blast hits to 251 proteins in 55 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).;Ribosomal L18p/L5e family protein transcript=eq;prot=eq; + 1 No
BD3G33287 bdi pid=Bradi3g33287.1;tid=Bradi3g33287.1;GeneName=Bradi3g33287;transcript=eq;prot=eq + Bd3 No
CP00504G00050 cpa name=evm.TU.supercontig_504.5;pid=evm.TU.supercontig_504.5;prot=eq;transcript=eq - supercontig_504 No
GM04G14470 gma 04 pid=16255877;transcript=eq;prot=eq;name=Glyma04g14470.1 + Gm04 No
GM06G46620 gma 06 pid=16265394;transcript=eq;prot=eq;name=Glyma06g46620.1 + Gm06 No
LJ0G024030 lja prot=eq;transcript=eq;scaffold=LjSGA_012599;name=LjSGA_012599.1 + LjSGA_012599 No
MD00G196440 mdo transcript=eq;prot=eq;pid=MDP0000409577;tid=MDP0000409577;contig=MDC008432.252 + MDC008432.252 No
MD00G208920 mdo transcript=eq;prot=eq;pid=MDP0000941162;tid=MDP0000941162;contig=MDC009028.750 - MDC009028.750 No
OS10G41050 osa ribosomal L18p%2FL5e family protein, expressed transcript=eq;prot=eq; + 10 No
OSINDICA_10G31380 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC031683; + Chr10 No
PP00263G00180 ppa NULL name=gw1.263.83.1,pid=48641,prot=eq,tid=48641 - scaffold_263 No
PT13G02840 ptr PACid=17342740;name=POPTR_0013s03030;alias=pt031251m,eugene3.00130278; transcript=eq;prot=eq;protein_id=17342740; - scaffold_13 No
RC27797G00010 rco name=27797.m000015;gene=27797.t000001;note=27797.t000001;transcript=eq;prot=eq + 27797 No
SB01G029100 sbi 1 prot=eq;pid=5049070;tid=5049070 - chr_1 No
SM00003G04770 smo proteinId=68956;transcriptId=68956;name=gw1.3.1563.1;transcript=eq;prot=eq - scaffold_3 No
TC05G024320 tca RNAname=Tc05_t024320;GeneName=Tc05_g024320;transcript=eq;prot=eq - Tc05 No
VV14G04480 vvi name=GSVIVG01021982001; transcript=eq;prot=eq;name=GSVIVG01021982001;pid=GSVIVG01021982001;tid=GSVIVT01021982001; - chr14 No
ZM01G21110 zma hypothetical protein LOC100275599 name=GRMZM2G154487;tid=GRMZM2G154487_T01;pid=GRMZM2G154487_P01;transcript=eq;prot=eq; - 1 No
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