Sub-family  

Parent family
HOM000003
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO009838 has 19 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 19 records out of 19 total, starting on record 1, ending on 19

gene_id species description comment strand chr outlier
AL1G05220 aly name=fgenesh2_kg.1__525__AT1G05670.1;pid=470571;prot=eq;tid=470571 - scaffold_1 No
AT1G05670 ath Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3; Bacteria - 657; Metazoa - 3612; Fungi - 1352; Plants - 68766; Viruses - 129; Other Eukaryotes - 2400 (source: NCBI BLink).;Pentatricopeptide repeat (PPR-like) superfamily protein transcript=eq;prot=eq; - 1 No
BD1G26330 bdi pid=Bradi1g26330.1;tid=Bradi1g26330.1;GeneName=Bradi1g26330;transcript=eq;prot=eq - Bd1 No
CP00005G02850 cpa name=evm.TU.supercontig_5.285;pid=evm.TU.supercontig_5.285;prot=eq;transcript=eq - supercontig_5 No
FV4G22930 fve Pentatricopeptide repeat-containing protein At1g05665, mitochondrial, Precursor (putative) transcript=eq;prot=eq;pid=gene00760 + LG4 No
GM08G40580 gma 08 pid=16273376;transcript=eq;prot=eq;name=Glyma08g40580.1 + Gm08 No
MD00G166920 mdo transcript=eq;prot=eq;pid=MDP0000183544;tid=MDP0000183544;contig=MDC007136.98 + MDC007136.98 No
MD13G005570 mdo transcript=eq;prot=eq;pid=MDP0000289246;tid=MDP0000289246;contig=MDC010044.242 - 13 No
MD16G004450 mdo transcript=eq;prot=eq;pid=MDP0000205160;tid=MDP0000205160;contig=MDC017763.110 - 16 No
ME04209G00190 mes PACid=17993651;RNAname=cassava4.1_031366m;GeneName=cassava4.1_031366m.g;transcript=ne;prot=eq - scaffold04209 No
MT8G105170 mtr Tau class glutathione S-transferase (Fragment) (AHRD V1 *-*- C6F771_9CONI); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal transcript=eq;prot=eq;pid=Medtr8g105170.1; - 8 No
OS07G32900 osa PPR repeat containing protein, expressed transcript=eq;prot=eq; + 7 No
OSINDICA_07G25770 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC023814; - Chr07 No
PT10G03370 ptr PACid=17337170;name=POPTR_0010s04510;alias=pt011773m,eugene3.00082004; transcript=eq;prot=eq;protein_id=17337170; - scaffold_10 No
RC29736G00620 rco name=29736.m002066;gene=29736.t000062;note=29736.t000062;transcript=eq;prot=eq - 29736 No
SB02G034620 sbi 2 prot=eq;pid=5034400;tid=5034400 + chr_2 No
TC02G022460 tca RNAname=Tc02_t022460;GeneName=Tc02_g022460;transcript=eq;prot=eq - Tc02 No
VV01G12960 vvi name=GSVIVG01020108001; transcript=eq;prot=eq;name=GSVIVG01020108001;pid=GSVIVG01020108001;tid=GSVIVT01020108001; + chr1 No
ZM02G36230 zma Putative uncharacterized protein name=GRMZM2G168679;tid=GRMZM2G168679_T01;pid=GRMZM2G168679_P01;transcript=eq;prot=eq; + 2 No
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