Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO009678 has 20 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G27030 aly name=scaffold_802725.1;pid=919325;prot=eq;tid=950838 + scaffold_8 No
AT5G60860 ath RAB GTPase homolog A1F (RABA1f); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1G (TAIR:AT3G15060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RAB GTPase homolog A1F transcript=eq;prot=eq; + 5 No
BD4G28130 bdi GTPase activity (Blast2GO) pid=Bradi4g28130.1;tid=Bradi4g28130.1;GeneName=Bradi4g28130;transcript=eq;prot=eq - Bd4 No
CP00131G00800 cpa name=evm.TU.supercontig_131.80;pid=evm.TU.supercontig_131.80;prot=eq;transcript=eq + supercontig_131 No
FV3G13420 fve Ras-related protein Rab11B (similar to) transcript=eq;prot=eq;pid=gene29786 - LG3 No
GM12G14070 gma 12 pid=16287427;transcript=eq;prot=eq;name=Glyma12g14070.1 - Gm12 No
GM13G24160 gma 13 pid=16291387;transcript=eq;prot=eq;name=Glyma13g24160.1 + Gm13 No
MD10G022990 mdo transcript=eq;prot=eq;pid=MDP0000198183;tid=MDP0000198183;contig=MDC013336.182 + 10 No
ME04851G00670 mes PACid=17970040;RNAname=cassava4.1_015934m;GeneName=cassava4.1_015934m.g;transcript=eq;prot=eq - scaffold04851 No
MT2G014990 mtr GTP-binding protein ras-like (AHRD V1 **-* Q9FJH0_ARATH); contains Interpro domain(s) IPR015595 Rab11-related transcript=eq;prot=eq;pid=Medtr2g014990.1; - 2 No
MT4G079350 mtr GTP-binding protein ras-like (AHRD V1 **-* Q9FJH0_ARATH); contains Interpro domain(s) IPR015595 Rab11-related transcript=eq;prot=eq;pid=Medtr4g079350.1; - 4 No
OS09G15790 osa ras%2Drelated protein, putative, expressed transcript=eq;prot=eq; - 9 No
OSINDICA_09G11570 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC028289; - Chr09 No
PT11G05780 ptr PACid=17338032;name=POPTR_0011s05970;alias=pt014554m,Pt-RAB11.12,estExt_fgenesh4_pg.C_1870018; transcript=eq;prot=eq;protein_id=17338032; - scaffold_11 No
PT19G11090 ptr PACid=17330397;name=POPTR_0019s12230;alias=pt010347m,eugene3.00190842,Pt-RAB11.11; transcript=eq;prot=eq;protein_id=17330397; + scaffold_19 No
RC29900G00160 rco name=29900.m001554;gene=29900.t000016;note=29900.t000016;transcript=eq;prot=eq - 29900 No
SB02G022140 sbi 2 prot=eq;pid=5051056;tid=5051056 - chr_2 No
TC06G015050 tca RNAname=Tc06_t015050;GeneName=Tc06_g015050;transcript=eq;prot=eq + Tc06 No
ZM02G29450 zma hypothetical protein LOC100193158 name=GRMZM2G039900;tid=GRMZM2G039900_T01;pid=GRMZM2G039900_P01;transcript=ne;prot=eq; + 2 No
ZM07G11350 zma hypothetical protein LOC100381498 name=GRMZM2G124732;tid=GRMZM2G124732_T01;pid=GRMZM2G124732_P01;transcript=ne;prot=eq; - 7 No
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