Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO009645 has 20 genes in 15 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G00380 aly name=fgenesh2_kg.8__36__AT5G47520.1;pid=494220;prot=eq;tid=494220 + scaffold_8 No
AT5G47520 ath RAB GTPase homolog A5A (RABA5a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RAB GTPase homolog A5A transcript=eq;prot=eq; - 5 No
BD1G20300 bdi GTPase activity (Blast2GO) pid=Bradi1g20300.1;tid=Bradi1g20300.1;GeneName=Bradi1g20300;transcript=eq;prot=eq - Bd1 No
CP00027G02630 cpa name=evm.TU.supercontig_27.264;pid=evm.TU.supercontig_27.264;prot=eq;transcript=eq - supercontig_27 No
FV3G02480 fve Ras-related protein ARA-4 (similar to) transcript=eq;prot=eq;pid=gene19795 + LG3 No
GM10G31470 gma 10 pid=16280587;transcript=eq;prot=eq;name=Glyma10g31470.1 + Gm10 No
GM20G36100 gma 20 pid=16318028;transcript=eq;prot=eq;name=Glyma20g36100.1 - Gm20 No
MD00G142000 mdo transcript=eq;prot=eq;pid=MDP0000238113;tid=MDP0000238113;contig=MDC006089.229 + MDC006089.229 No
MD00G193320 mdo transcript=eq;prot=eq;pid=MDP0000864347;tid=MDP0000864347;contig=MDC008302.80 - MDC008302.80 No
MD00G409140 mdo transcript=eq;prot=eq;pid=MDP0000322128;tid=MDP0000322128;contig=MDC018611.51 + MDC018611.51 No
MD10G027570 mdo transcript=eq;prot=eq;pid=MDP0000302399;tid=MDP0000302399;contig=MDC017166.102 + 10 No
ME04332G00030 mes PACid=17992126;RNAname=cassava4.1_015701m;GeneName=cassava4.1_015701m.g;transcript=eq;prot=eq + scaffold04332 No
OS07G44040 osa ras%2Drelated protein, putative, expressed transcript=eq;prot=eq; + 7 No
OSINDICA_07G35960 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC024502; + Chr07 No
PT06G01460 ptr PACid=17323495;name=POPTR_0006s01650;alias=pt018637m,Pt-RAB11.16,estExt_fgenesh4_pm.C_LG_VI0048; transcript=eq;prot=eq;protein_id=17323495; + scaffold_6 No
PT16G00970 ptr PACid=17334012;name=POPTR_0016s01160;alias=pt003462m,Pt-RAB11.14,estExt_fgenesh4_kg.C_LG_XVI0002; transcript=eq;prot=eq;protein_id=17334012; - scaffold_16 No
RC30048G00110 rco name=30048.m000317;gene=30048.t000011;note=30048.t000011;transcript=eq;prot=eq + 30048 No
SB02G040430 sbi 2 prot=eq;pid=5052100;tid=5052100 + chr_2 No
TC06G020470 tca RNAname=Tc06_t020470;GeneName=Tc06_g020470;transcript=eq;prot=eq + Tc06 No
ZM07G28190 zma hypothetical protein LOC100193344 name=GRMZM2G335738;tid=GRMZM2G335738_T01;pid=GRMZM2G335738_P01;transcript=ne;prot=eq; + 7 No
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