Sub-family  

Parent family
HOM000204
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO009617 has 20 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G28360 aly name=fgenesh2_kg.7__2781__AT4G15417.1;pid=493348;prot=eq;tid=493348 - scaffold_7 No
AT4G15417 ath RNAse II-like 1 (RTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 2 (TAIR:AT3G20420.1); Has 6428 Blast hits to 6386 proteins in 2315 species: Archae - 23; Bacteria - 4325; Metazoa - 271; Fungi - 247; Plants - 236; Viruses - 14; Other Eukaryotes - 1312 (source: NCBI BLink).;RNAse II-like 1 transcript=eq;prot=eq; + 4 No
BD1G41980 bdi bidentate ribonuclease III activity (Blast2GO) pid=Bradi1g41980.1;tid=Bradi1g41980.1;GeneName=Bradi1g41980;transcript=eq;prot=eq - Bd1 No
CP00087G01040 cpa name=evm.TU.supercontig_87.104;pid=evm.TU.supercontig_87.104;prot=eq;transcript=eq - supercontig_87 No
FV0G09790 fve Ribonuclease 3-like protein 3 (RNase III-like protein 3) (similar to) transcript=eq;prot=eq;pid=gene06299 + scf0513158 No
FV1G17070 fve Ribonuclease 3-like protein 3 (RNase III-like protein 3) (probable) transcript=eq;prot=eq;pid=gene23985 - LG1 No
MD00G096120 mdo transcript=eq;prot=eq;pid=MDP0000169234;tid=MDP0000169234;contig=MDC004091.109 + MDC004091.109 No
MD00G154680 mdo transcript=eq;prot=eq;pid=MDP0000248673;tid=MDP0000248673;contig=MDC006654.355 + MDC006654.355 No
ME03402G00030 mes PACid=17990517;RNAname=cassava4.1_031224m;GeneName=cassava4.1_031224m.g;transcript=eq;prot=eq - scaffold03402 No
MT3G079860 mtr Endoribonuclease Dicer homolog 2b (AHRD V1 *-*- Q69LX2); contains Interpro domain(s) IPR000999 Ribonuclease III transcript=eq;prot=eq;pid=Medtr3g079860.1; - 3 No
MT3G079980 mtr Endoribonuclease Dicer homolog (AHRD V1 *-*- Q9SP32); contains Interpro domain(s) IPR000999 Ribonuclease III transcript=eq;prot=eq;pid=Medtr3g079980.1; - 3 No
MT3G080000 mtr Ribonuclease 3-like protein 3 (AHRD V1 ***- Q69KJ0); contains Interpro domain(s) IPR000999 Ribonuclease III transcript=eq;prot=eq;pid=Medtr3g080000.1; - 3 No
OS06G25250 osa endoribonuclease Dicer, putative, expressed transcript=eq;prot=eq; + 6 No
OSINDICA_06G22870 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC010623; + Chr06 No
PT02G21110 ptr PACid=17339289;name=POPTR_0002s21490;alias=pt021162m,fgenesh4_pg.C_LG_II002055; transcript=eq;prot=eq;protein_id=17339289; - scaffold_2 No
RC27988G00010 rco name=27988.m000029;gene=27988.t000001;note=27988.t000001;transcript=eq;prot=eq - 27988 No
SB07G015020 sbi 7 prot=eq;pid=5058646;tid=5058646 + chr_7 No
TC01G016100 tca RNAname=Tc01_t016100;GeneName=Tc01_g016100;transcript=eq;prot=eq - Tc01 No
VV12G11200 vvi name=GSVIVG01030481001; transcript=eq;prot=eq;name=GSVIVG01030481001;pid=GSVIVG01030481001;tid=GSVIVT01030481001; - chr12 No
ZM01G39550 zma hypothetical protein LOC100273842 name=GRMZM2G101105;tid=GRMZM2G101105_T01;pid=GRMZM2G101105_P01;transcript=eq;prot=eq; + 1 No
<< previous
next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier