Sub-family  

Parent family
HOM000011
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)



The gene family ORTHO009602 has 20 genes in 13 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G18840 aly name=fgenesh2_kg.7__1973__AT4G23340.1;pid=492540;prot=eq;tid=492540 + scaffold_7 No
AT4G23340 ath 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G51310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein transcript=eq;prot=eq; - 4 No
CP00013G02670 cpa name=evm.TU.supercontig_13.267;pid=evm.TU.supercontig_13.267;prot=eq;transcript=eq - supercontig_13 No
FV7G08110 fve Gibberellin 3-beta-dioxygenase 4 (AtGA3ox4) (probable) transcript=eq;prot=eq;pid=gene19320 + LG7 No
GM03G01190 gma 03 pid=16250745;transcript=eq;prot=eq;name=Glyma03g01190.1 - Gm03 No
GM09G39570 gma 09 pid=16277766;transcript=eq;prot=eq;name=Glyma09g39570.1 - Gm09 No
LJ0G458150 lja prot=eq;transcript=eq;scaffold=LjT34L14;name=LjT34L14.120.nc + chr0 No
LJ5G022940 lja prot=eq;transcript=eq;scaffold=CM0095;name=chr5.CM0095.260.nd + chr5 No
MD00G211910 mdo transcript=eq;prot=eq;pid=MDP0000149070;tid=MDP0000149070;contig=MDC009148.317 + MDC009148.317 No
MD00G368240 mdo transcript=eq;prot=eq;pid=MDP0000512727;tid=MDP0000512727;contig=MDC016638.242 - MDC016638.242 No
ME03581G01800 mes PACid=17975651;RNAname=cassava4.1_022927m;GeneName=cassava4.1_022927m.g;transcript=eq;prot=eq + scaffold03581 No
ME05280G00490 mes PACid=17971035;RNAname=cassava4.1_024778m;GeneName=cassava4.1_024778m.g;transcript=eq;prot=eq + scaffold05280 No
MT7G077670 mtr Gibberellin 3-beta-dioxygenase 4 (AHRD V1 **** Q9C971); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase transcript=eq;prot=eq;pid=Medtr7g077670.1; + 7 No
PT02G15900 ptr PACid=17346178;name=POPTR_0002s16090;alias=pt021047m,fgenesh4_pm.C_LG_II000736,2OGox21; transcript=eq;prot=eq;protein_id=17346178; - scaffold_2 No
PT03G11870 ptr PACid=17314262;name=POPTR_0003s12820;alias=pt023658m,eugene3.00031009,2OGox5; transcript=eq;prot=eq;protein_id=17314262; - scaffold_3 No
RC30174G02830 rco name=30174.m009160;gene=30174.t000557;note=30174.t000557;transcript=eq;prot=eq - 30174 No
RC30190G03920 rco name=30190.m011224;gene=30190.t000460;note=30190.t000460;transcript=eq;prot=eq - 30190 No
TC03G027510 tca RNAname=Tc03_t027510;GeneName=Tc03_g027510;transcript=eq;prot=eq - Tc03 No
VV02G06410 vvi name=GSVIVG01019749001; transcript=eq;prot=eq;name=GSVIVG01019749001;pid=GSVIVG01019749001;tid=GSVIVT01019749001; + chr2 No
VV15G04950 vvi name=GSVIVG01026928001; transcript=eq;prot=eq;name=GSVIVG01026928001;pid=GSVIVG01026928001;tid=GSVIVT01026928001; + chr15 No
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