Sub-family  

Parent family
HOM000168
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO009489 has 20 genes in 13 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G10710 aly name=scaffold_601111.1;pid=909054;prot=eq;tid=940567 + scaffold_6 No
AT5G10970 ath C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 3 (TAIR:AT5G25160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;C2H2 and C2HC zinc fingers superfamily protein transcript=eq;prot=eq; + 5 No
CP00127G00080 cpa name=evm.TU.supercontig_127.8;pid=evm.TU.supercontig_127.8;prot=eq;transcript=eq - supercontig_127 No
FV2G52100 fve Zinc finger protein 1 (probable) transcript=eq;prot=eq;pid=gene15032 - LG2 No
GM04G06660 gma 04 pid=16255094;transcript=eq;prot=eq;name=Glyma04g06660.1 + Gm04 No
GM06G06750 gma 06 pid=16261970;transcript=eq;prot=eq;name=Glyma06g06750.1 + Gm06 No
GM14G13360 gma 14 pid=16295365;transcript=eq;prot=eq;name=Glyma14g13360.1 + Gm14 No
GM17G33130 gma 17 pid=16306888;transcript=eq;prot=eq;name=Glyma17g33130.1 - Gm17 No
LJ5G006780 lja prot=eq;transcript=eq;scaffold=CM0345;name=chr5.CM0345.450.nc + chr5 No
MD00G151920 mdo transcript=eq;prot=eq;pid=MDP0000282090;tid=MDP0000282090;contig=MDC006537.193 - MDC006537.193 No
MD00G324710 mdo transcript=eq;prot=eq;pid=MDP0000891859;tid=MDP0000891859;contig=MDC013745.338 + MDC013745.338 No
MD01G019790 mdo transcript=eq;prot=eq;pid=MDP0000869725;tid=MDP0000869725;contig=MDC022295.98 - 1 No
ME00847G02100 mes PACid=17985803;RNAname=cassava4.1_021303m;GeneName=cassava4.1_021303m.g;transcript=ne;prot=eq - scaffold00847 No
ME03049G00300 mes PACid=17959930;RNAname=cassava4.1_027382m;GeneName=cassava4.1_027382m.g;transcript=eq;prot=eq - scaffold03049 No
MT3G106230 mtr Zinc finger protein 1 (AHRD V1 *-*- B6U456_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type transcript=eq;prot=eq;pid=Medtr3g106230.1; + 3 No
PT06G26050 ptr PACid=17338051;name=POPTR_0006s27760;alias=pt018472m; transcript=eq;prot=eq;protein_id=17338051; - scaffold_6 No
PT18G02130 ptr PACid=17317269;name=POPTR_0018s02320;alias=pt008953m; transcript=eq;prot=eq;protein_id=17317269; - scaffold_18 No
RC29848G01160 rco name=29848.m004561;gene=29848.t000117;note=29848.t000117;transcript=eq;prot=eq + 29848 No
TC09G001650 tca RNAname=Tc09_t001650;GeneName=Tc09_g001650;transcript=eq;prot=eq + Tc09 No
VV04G12580 vvi name=GSVIVG01035905001; transcript=eq;prot=eq;name=GSVIVG01035905001;pid=GSVIVG01035905001;tid=GSVIVT01035905001; + chr4 No
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