Sub-family  

Parent family
HOM000013
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (3 genes)
zma
Zea mays (1 gene)



The gene family ORTHO009301 has 20 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G20370 aly name=fgenesh2_kg.3__2088__AT3G18777.1;pid=479387;prot=eq;tid=479387 + scaffold_3 No
AT1G49230 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49200.1); Has 9168 Blast hits to 9144 proteins in 279 species: Archae - 0; Bacteria - 0; Metazoa - 2452; Fungi - 610; Plants - 4926; Viruses - 41; Other Eukaryotes - 1139 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 1 No
BD5G09830 bdi RING, subfamily RING-H2 finger protein, putative pid=Bradi5g09830.1;tid=Bradi5g09830.1;GeneName=Bradi5g09830;transcript=eq;prot=eq + Bd5 No
CP00042G00940 cpa name=evm.TU.supercontig_42.94;pid=evm.TU.supercontig_42.94;prot=eq;transcript=eq - supercontig_42 No
FV7G03780 fve RING-H2 finger protein ATL1L (putative) transcript=eq;prot=eq;pid=gene18569 - LG7 No
GM04G39360 gma 04 pid=16257264;transcript=eq;prot=eq;name=Glyma04g39360.1 + Gm04 No
GM06G15550 gma 06 pid=16263075;transcript=eq;prot=eq;name=Glyma06g15550.1 - Gm06 No
LJ0G163100 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_051232;name=LjSGA_051232.1 + LjSGA_051232 No
MD13G024210 mdo transcript=eq;prot=eq;pid=MDP0000853517;tid=MDP0000853517;contig=MDC004796.426 + 13 No
ME06948G00160 mes PACid=17973637;RNAname=cassava4.1_015650m;GeneName=cassava4.1_015650m.g;transcript=eq;prot=eq - scaffold06948 No
ME09150G00030 mes PACid=17990973;RNAname=cassava4.1_028577m;GeneName=cassava4.1_028577m.g;transcript=eq;prot=eq - scaffold09150 No
MT3G095560 mtr Ring-H2 zinc finger protein (AHRD V1 *-*- B0ZBI8_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type transcript=eq;prot=eq;pid=Medtr3g095560.1; - 3 No
OS04G34230 osa RING%2DH2 finger protein, putative, expressed transcript=eq;prot=eq; + 4 No
PT01G30950 ptr PACid=17302158;name=POPTR_0001s31710;alias=pt040044m,fgenesh4_pg.C_LG_I002524; transcript=eq;prot=eq;protein_id=17302158; - scaffold_1 No
RC30206G00060 rco name=30206.m000758;gene=30206.t000006;note=30206.t000006;transcript=eq;prot=eq + 30206 No
SB06G016320 sbi 6 prot=eq;pid=5041786;tid=5041786 + chr_6 No
TC01G010910 tca RNAname=Tc01_t010910;GeneName=Tc01_g010910;transcript=eq;prot=eq - Tc01 No
TC01G010920 tca RNAname=Tc01_t010920;GeneName=Tc01_g010920;transcript=eq;prot=eq - Tc01 No
TC01G010930 tca RNAname=Tc01_t010930;GeneName=Tc01_g010930;transcript=eq;prot=eq - Tc01 No
ZM10G16370 zma name=GRMZM2G059110;tid=GRMZM2G059110_T01;pid=GRMZM2G059110_P01;transcript=eq;prot=eq; + 10 No
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