Sub-family  

Parent family
HOM002653
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO009144 has 20 genes in 14 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 1, showing 20 records out of 20 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G13810 aly name=fgenesh2_kg.1__1426__AT1G13190.1;pid=471472;prot=eq;tid=471472 + scaffold_1 No
AT1G13190 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G55670.1); Has 32447 Blast hits to 17825 proteins in 1064 species: Archae - 7; Bacteria - 12227; Metazoa - 10368; Fungi - 2543; Plants - 3608; Viruses - 174; Other Eukaryotes - 3520 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; + 1 No
CP00033G00780 cpa name=evm.TU.supercontig_33.78;pid=evm.TU.supercontig_33.78;prot=eq;transcript=eq + supercontig_33 No
FV0G11270 fve Multiple RNA-binding domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene06969 + scf0513160 No
FV0G11280 fve Cleavage and polyadenylation specificity factor subunit 7 (probable) transcript=eq;prot=eq;pid=gene06970 + scf0513160 No
MD00G008930 mdo transcript=eq;prot=eq;pid=MDP0000162382;tid=MDP0000162382;contig=MDC000337.408 - MDC000337.408 No
MD13G007960 mdo transcript=eq;prot=eq;pid=MDP0000491894;tid=MDP0000491894;contig=MDC009663.119 + 13 No
MD16G006350 mdo transcript=eq;prot=eq;pid=MDP0000642690;tid=MDP0000642690;contig=MDC003253.37 + 16 No
ME05474G00090 mes PACid=17962296;RNAname=cassava4.1_003302m;GeneName=cassava4.1_003302m.g;transcript=eq;prot=eq - scaffold05474 No
OL12G00960 olu NULL name=eugene.1200010095,pid=26750,prot=eq,tid=26750 + Chr_12 No
PP00042G01250 ppa NULL name=e_gw1.42.153.1,pid=122923,prot=eq,tid=122923 + scaffold_42 No
PP00138G00520 ppa NULL name=e_gw1.138.6.1,pid=137570,prot=eq,tid=137570 - scaffold_138 No
PT08G18090 ptr PACid=17345040;name=POPTR_0008s18280;alias=pt026706m,fgenesh4_pm.C_LG_VIII000777; transcript=eq;prot=eq;protein_id=17345040; - scaffold_8 No
PT10G05010 ptr PACid=17343314;name=POPTR_0010s06150;alias=pt011460m; transcript=eq;prot=eq;protein_id=17343314; + scaffold_10 No
RC29929G02770 rco name=29929.m004777;gene=29929.t000280;note=29929.t000280;transcript=eq;prot=eq - 29929 No
SM00000G04280 smo proteinId=7061;transcriptId=7061;name=gw1.0.270.1;transcript=eq;prot=eq - scaffold_0 No
TC02G025620 tca RNAname=Tc02_t025620;GeneName=Tc02_g025620;transcript=eq;prot=eq + Tc02 No
TC02G025690 tca RNAname=Tc02_t025690;GeneName=Tc02_g025690;transcript=eq;prot=eq + Tc02 No
VC00042G01150 vca name=e_gw1.42.63.1;pid=64777;prot=eq;tid=64777 + scaffold_42 No
VV01G00490 vvi name=GSVIVG01000588001; transcript=eq;prot=eq;name=GSVIVG01000588001;pid=GSVIVG01000588001;tid=GSVIVT01000588001; - chr1 No
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