Sub-family  

Parent family
HOM001954
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008976 has 21 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G34300 aly name=scaffold_803492.1;pid=920092;prot=eq;tid=951605 - scaffold_8 No
AT5G66360 ath Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT2G47420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Ribosomal RNA adenine dimethylase family protein transcript=eq;prot=eq; + 5 No
BD1G26550 bdi rRNA (adenine-N6,N6-)-dimethyltransferase activity (Blast2GO) pid=Bradi1g26550.1;tid=Bradi1g26550.1;GeneName=Bradi1g26550;transcript=eq;prot=eq - Bd1 No
CP00217G00200 cpa name=evm.TU.supercontig_217.20;pid=evm.TU.supercontig_217.20;prot=eq;transcript=eq - supercontig_217 No
FV1G14310 fve Probable dimethyladenosine transferase transcript=eq;prot=eq;pid=gene14905 - LG1 No
GM01G37520 gma 01 pid=16245488;transcript=eq;prot=eq;name=Glyma01g37520.1 - Gm01 No
GM11G07770 gma 11 pid=16283049;transcript=eq;prot=eq;name=Glyma11g07770.1 + Gm11 No
LJ2G023030 lja prot=eq;transcript=eq;scaffold=CM0249;name=chr2.CM0249.440.nc - chr2 No
MD00G068670 mdo transcript=eq;prot=eq;pid=MDP0000168652;tid=MDP0000168652;contig=MDC002864.416 - MDC002864.416 No
MD00G321590 mdo transcript=eq;prot=eq;pid=MDP0000292716;tid=MDP0000292716;contig=MDC013638.183 - MDC013638.183 No
MD02G011960 mdo transcript=eq;prot=eq;pid=MDP0000823602;tid=MDP0000823602;contig=MDC017910.361 - 2 No
ME06512G00600 mes PACid=17966218;RNAname=cassava4.1_026841m;GeneName=cassava4.1_026841m.g;transcript=eq;prot=eq - scaffold06512 No
MT5G021210 mtr Dimethyladenosine transferase-like protein (AHRD V1 ***- Q9FK02_ARATH); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase transcript=eq;prot=eq;pid=Medtr5g021210.1; + 5 No
OS07G32550 osa dimethyladenosine transferase, putative, expressed transcript=eq;prot=eq; + 7 No
OSINDICA_07G25450 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC023796; + Chr07 No
PT18G02370 ptr PACid=17340970;name=POPTR_0018s02560;alias=pt008692m; transcript=eq;prot=eq;protein_id=17340970; - scaffold_18 No
RC29634G00020 rco name=29634.m002056;gene=29634.t000002;note=29634.t000002;transcript=eq;prot=eq + 29634 No
SB02G034350 sbi 2 prot=eq;pid=5034384;tid=5034384 + chr_2 No
TC01G002390 tca RNAname=Tc01_t002390;GeneName=Tc01_g002390;transcript=eq;prot=eq + Tc01 No
VV04G01320 vvi name=GSVIVG01018854001; transcript=eq;prot=eq;name=GSVIVG01018854001;pid=GSVIVG01018854001;tid=GSVIVT01018854001; - chr4 No
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