Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008970 has 21 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G32080 aly name=scaffold_803258.1;pid=919858;prot=eq;tid=951371 + scaffold_8 No
AT5G65270 ath RAB GTPase homolog A4A (RABA4a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4B (TAIR:AT4G39990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RAB GTPase homolog A4A transcript=eq;prot=eq; + 5 No
BD3G23330 bdi GTPase activity (Blast2GO) pid=Bradi3g23330.1;tid=Bradi3g23330.1;GeneName=Bradi3g23330;transcript=eq;prot=eq - Bd3 No
CP00055G00810 cpa name=evm.TU.supercontig_55.81;pid=evm.TU.supercontig_55.81;prot=eq;transcript=eq - supercontig_55 No
FV0G22230 fve Ras-related protein Rab11D (similar to) transcript=eq;prot=eq;pid=gene16252 - scf0513168 No
GM11G38010 gma 11 pid=16285779;transcript=eq;prot=eq;name=Glyma11g38010.1 - Gm11 No
GM18G01910 gma 18 pid=16307629;transcript=eq;prot=eq;name=Glyma18g01910.1 - Gm18 No
MD10G003810 mdo transcript=eq;prot=eq;pid=MDP0000466790;tid=MDP0000466790;contig=MDC012764.271 - 10 No
ME02559G00030 mes PACid=17980218;RNAname=cassava4.1_015599m;GeneName=cassava4.1_015599m.g;transcript=eq;prot=eq + scaffold02559 No
ME08265G01160 mes PACid=17988921;RNAname=cassava4.1_015568m;GeneName=cassava4.1_015568m.g;transcript=eq;prot=eq + scaffold08265 No
MT3G086980 mtr GTP-binding protein (AHRD V1 **** Q08147_PEA); contains Interpro domain(s) IPR015595 Rab11-related transcript=eq;prot=eq;pid=Medtr3g086980.1; - 3 No
OS10G23100 osa ras%2Drelated protein, putative, expressed transcript=eq;prot=eq; - 10 No
OSINDICA_10G15070 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC030574; - Chr10 No
PT05G07220 ptr PACid=17312106;name=POPTR_0005s07410;alias=pt033796m,grail3.0026011301,Pt-ATGB3.3; transcript=eq;prot=eq;protein_id=17312106; - scaffold_5 No
PT07G04930 ptr PACid=17305840;name=POPTR_0007s05120;alias=pt025804m,Pt-ATGB3.4,estExt_fgenesh4_pm.C_LG_VII0180; transcript=eq;prot=eq;protein_id=17305840; - scaffold_7 No
RC29772G00100 rco name=29772.m000317;gene=29772.t000010;note=29772.t000010;transcript=eq;prot=eq - 29772 No
SB00G00560 sbi 12 prot=eq;pid=5047289;tid=5047289 - scaffold_12 No
SM00024G01360 smo proteinId=232291;transcriptId=232291;name=fgenesh1_pm.C_scaffold_24000038;transcript=eq;prot=eq + scaffold_24 No
TC01G008550 tca RNAname=Tc01_t008550;GeneName=Tc01_g008550;transcript=eq;prot=eq - Tc01 No
VV07G02610 vvi name=GSVIVG01003415001; transcript=eq;prot=eq;name=GSVIVG01003415001;pid=GSVIVG01003415001;tid=GSVIVT01003415001; + chr7 No
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