Sub-family  

Parent family
HOM000001
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family ORTHO008693 has 21 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G18250 aly name=fgenesh1_pm.C_scaffold_5001046;pid=323502;prot=eq;tid=323502 - scaffold_5 No
AT3G49170 ath embryo defective 2261 (EMB2261); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48732 Blast hits to 14187 proteins in 273 species: Archae - 0; Bacteria - 16; Metazoa - 205; Fungi - 147; Plants - 47588; Viruses - 0; Other Eukaryotes - 776 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 3 No
BD2G32290 bdi beta-tubulin binding, actin filament binding (Blast2GO) pid=Bradi2g32290.1;tid=Bradi2g32290.1;GeneName=Bradi2g32290;transcript=eq;prot=eq - Bd2 No
CP00003G00650 cpa name=evm.TU.supercontig_3.65;pid=evm.TU.supercontig_3.65;prot=eq;transcript=eq - supercontig_3 No
FV6G41630 fve Pentatricopeptide repeat-containing protein At3g49170, chloroplastic, Precursor (putative) transcript=eq;prot=eq;pid=gene04186 + LG6 No
GM00G00220 gma 48 pid=16242719;transcript=eq;prot=eq;name=Glyma0048s00240.1 + scaffold_48 No
GM03G42550 gma 03 pid=16254281;transcript=eq;prot=eq;name=Glyma03g42550.1 - Gm03 No
LJ3G004740 lja prot=eq;transcript=eq;scaffold=CM0634;name=chr3.CM0634.480.nc + chr3 No
MD17G005850 mdo transcript=eq;prot=eq;pid=MDP0000595474;tid=MDP0000595474;contig=MDC010787.146 - 17 No
ME02903G00050 mes PACid=17982055;RNAname=cassava4.1_034194m;GeneName=cassava4.1_034194m.g;transcript=eq;prot=eq - scaffold02903 No
MT4G031160 mtr Pentatricopeptide repeat-containing protein At3g49170, chloroplastic (AHRD V1 ***- Q5G1T1); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat transcript=eq;prot=eq;pid=Medtr4g031160.1; - 4 No
OS05G12130 osa EMB2261, putative, expressed transcript=eq;prot=eq; + 5 No
OSINDICA_05G10390 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC041379; + Chr05 No
PT15G01870 ptr PACid=17336248;name=POPTR_0015s02060;alias=pt000165m; transcript=eq;prot=eq;protein_id=17336248; + scaffold_15 No
RC29680G00680 rco name=29680.m001729;gene=29680.t000072;note=29680.t000072;transcript=eq;prot=eq - 29680 No
SB09G006640 sbi 9 prot=eq;pid=5046107;tid=5046107 + chr_9 No
SM00004G06240 smo proteinId=82072;transcriptId=82072;name=e_gw1.4.6.1;transcript=eq;prot=eq - scaffold_4 No
TC03G017390 tca RNAname=Tc03_t017390;GeneName=Tc03_g017390;transcript=eq;prot=eq + Tc03 No
VV00G15390 vvi name=GSVIVG01006104001; transcript=eq;prot=eq;name=GSVIVG01006104001;pid=GSVIVG01006104001;tid=GSVIVT01006104001; + chrUn No
VV00G15520 vvi name=GSVIVG01006121001; transcript=eq;prot=eq;name=GSVIVG01006121001;pid=GSVIVG01006121001;tid=GSVIVT01006121001; - chrUn No
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