Sub-family  

Parent family
HOM000003
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008576 has 21 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G40840 aly name=fgenesh2_kg.3__3538__AT2G18940.1;pid=480837;prot=eq;tid=480837 + scaffold_3 No
AT2G18940 ath Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 70772 Blast hits to 15680 proteins in 317 species: Archae - 4; Bacteria - 89; Metazoa - 1190; Fungi - 1125; Plants - 65689; Viruses - 0; Other Eukaryotes - 2675 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 2 No
BD1G31370 bdi single-stranded DNA binding (Blast2GO) pid=Bradi1g31370.1;tid=Bradi1g31370.1;GeneName=Bradi1g31370;transcript=eq;prot=eq + Bd1 No
CP00095G00470 cpa name=evm.TU.supercontig_95.47;pid=evm.TU.supercontig_95.47;prot=eq;transcript=eq + supercontig_95 No
FV4G03540 fve Pentatricopeptide repeat-containing protein At2g18940 (putative) transcript=eq;prot=eq;pid=gene17002 - LG4 No
GM09G06230 gma 09 pid=16274958;transcript=eq;prot=eq;name=Glyma09g06230.1 - Gm09 No
GM15G17500 gma 15 pid=16299102;transcript=eq;prot=eq;name=Glyma15g17500.1 - Gm15 No
LJ6G011860 lja partial;prot=eq;transcript=eq;scaffold=LjT36L14;name=chr6.LjT36L14.60.nd + chr6 No
MD00G229650 mdo transcript=eq;prot=eq;pid=MDP0000322447;tid=MDP0000322447;contig=MDC009961.356 - MDC009961.356 No
MD13G029310 mdo transcript=eq;prot=eq;pid=MDP0000190552;tid=MDP0000190552;contig=MDC010747.397 - 13 No
ME05539G00010 mes PACid=17983088;RNAname=cassava4.1_001679m;GeneName=cassava4.1_001679m.g;transcript=eq;prot=eq + scaffold05539 No
ME10802G00060 mes PACid=17985429;RNAname=cassava4.1_021101m;GeneName=cassava4.1_021101m.g;transcript=ne;prot=eq - scaffold10802 No
MT2G036560 mtr Pentatricopeptide repeat-containing protein At2g18940 (AHRD V1 ***- O64624); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat transcript=eq;prot=eq;pid=Medtr2g036560.1; - 2 No
OS05G19380 osa pentatricopeptide, putative, expressed transcript=eq;prot=eq; - 5 No
OSINDICA_05G18410 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC041485; - Chr05 No
PT06G16660 ptr PACid=17331553;name=POPTR_0006s17990;alias=pt017096m,fgenesh4_pm.C_scaffold_121000016; transcript=eq;prot=eq;protein_id=17331553; + scaffold_6 No
RC29698G00010 rco name=29698.m000065;gene=29698.t000001;note=29698.t000001;transcript=eq;prot=eq + 29698 No
SB10G026180 sbi 10 prot=eq;pid=5062041;tid=5062041 + chr_10 No
TC09G017950 tca RNAname=Tc09_t017950;GeneName=Tc09_g017950;transcript=eq;prot=eq + Tc09 No
VV11G09320 vvi name=GSVIVG01029248001; transcript=eq;prot=eq;name=GSVIVG01029248001;pid=GSVIVG01029248001;tid=GSVIVT01029248001; - chr11 No
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