Sub-family  

Parent family
HOM002246
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008554 has 21 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G29240 aly name=Al_scaffold_0003_2826;pid=874185;prot=eq;tid=905698 + scaffold_3 No
AT3G25430 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G55870.1); Has 339 Blast hits to 335 proteins in 120 species: Archae - 0; Bacteria - 10; Metazoa - 154; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 3 No
BD3G36960 bdi serine-type carboxypeptidase activity (Blast2GO) pid=Bradi3g36960.1;tid=Bradi3g36960.1;GeneName=Bradi3g36960;transcript=eq;prot=eq - Bd3 No
CP00008G00610 cpa name=evm.TU.supercontig_8.61;pid=evm.TU.supercontig_8.61;prot=eq;transcript=eq - supercontig_8 No
FV2G13280 fve Poly(A)-specific ribonuclease PARN-like (putative) transcript=eq;prot=eq;pid=gene17388 - LG2 No
LJ1G038240 lja partial;prot=eq;transcript=eq;scaffold=CM0800;name=chr1.CM0800.500.nd + chr1 No
MD00G002310 mdo transcript=eq;prot=eq;pid=MDP0000232512;tid=MDP0000232512;contig=MDC000091.164 + MDC000091.164 No
MD00G157150 mdo transcript=eq;prot=eq;pid=MDP0000284483;tid=MDP0000284483;contig=MDC006747.126 + MDC006747.126 No
MD00G363250 mdo transcript=eq;prot=eq;pid=MDP0000145569;tid=MDP0000145569;contig=MDC016329.286 + MDC016329.286 No
MD10G010860 mdo transcript=eq;prot=eq;pid=MDP0000127491;tid=MDP0000127491;contig=MDC013079.487 - 10 No
ME01190G00050 mes PACid=17982621;RNAname=cassava4.1_003678m;GeneName=cassava4.1_003678m.g;transcript=eq;prot=eq + scaffold01190 No
MT7G051360 mtr Poly(A)-specific ribonuclease PARN-like (AHRD V1 ***- Q8W4C3); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 transcript=eq;prot=eq;pid=Medtr7g051360.1; - 7 No
MT7G051380 mtr Poly(A)-specific ribonuclease PARN-like (AHRD V1 ***- Q8W4C3); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 transcript=eq;prot=eq;pid=Medtr7g051380.1; - 7 No
OS08G34160 osa CAF1 family ribonuclease containing protein, putative, expressed transcript=eq;prot=eq; + 8 No
OSINDICA_08G32160 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC026869; + Chr08 No
PT14G01690 ptr PACid=17318812;name=POPTR_0014s01880;alias=pt035305m,eugene3.00140106; transcript=eq;prot=eq;protein_id=17318812; - scaffold_14 No
PT14G17380 ptr PACid=17304198;name=POPTR_0014s17570;alias=pt035525m; transcript=eq;prot=eq;protein_id=17304198; - scaffold_14 No
RC30178G00190 rco name=30178.m000857;gene=30178.t000019;note=30178.t000019;transcript=eq;prot=eq + 30178 No
SB07G021600 sbi 7 prot=eq;pid=5058777;tid=5058777 + chr_7 No
TC01G020080 tca RNAname=Tc01_t020080;GeneName=Tc01_g020080;transcript=eq;prot=eq + Tc01 No
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