Sub-family 
- Id
- ORTHO008544
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM002097
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (1 gene)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (2 genes)
The gene family ORTHO008544 has 21 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO008544
Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20
gene_id | species | description | comment | strand | chr | outlier |
---|---|---|---|---|---|---|
AL3G20350 | aly | name=Al_scaffold_0003_1980;pid=873339;prot=eq;tid=904852 | - | scaffold_3 | No | |
AT3G18770 | ath | Autophagy-related protein 13; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G49590.1); Has 480 Blast hits to 395 proteins in 141 species: Archae - 0; Bacteria - 18; Metazoa - 72; Fungi - 154; Plants - 106; Viruses - 7; Other Eukaryotes - 123 (source: NCBI BLink).;Autophagy-related protein 13 | transcript=eq;prot=eq; | - | 3 | No |
BD4G24767 | bdi | pid=Bradi4g24767.1;tid=Bradi4g24767.1;GeneName=Bradi4g24767;transcript=eq;prot=eq | + | Bd4 | No | |
FV7G03720 | fve | Autophagy-related protein 13 (probable) | transcript=eq;prot=eq;pid=gene18563 | - | LG7 | No |
GM05G32250 | gma | 05 | pid=16260401;transcript=eq;prot=eq;name=Glyma05g32250.1 | + | Gm05 | No |
GM08G15500 | gma | 08 | pid=16271274;transcript=eq;prot=eq;name=Glyma08g15500.1 | + | Gm08 | No |
LJ0G078870 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_026422;name=LjSGA_026422.1 | + | LjSGA_026422 | No | |
MD01G001570 | mdo | transcript=eq;prot=eq;pid=MDP0000321294;tid=MDP0000321294;contig=MDC012407.352 | - | 1 | No | |
ME00185G00020 | mes | PACid=17970259;RNAname=cassava4.1_024177m;GeneName=cassava4.1_024177m.g;transcript=eq;prot=eq | - | scaffold00185 | No | |
ME06948G00180 | mes | PACid=17973629;RNAname=cassava4.1_003899m;GeneName=cassava4.1_003899m.g;transcript=eq;prot=eq | + | scaffold06948 | No | |
MT3G095570 | mtr | Autophagy-related protein 13 (AHRD V1 *-*- Q6BQ20); contains Interpro domain(s) IPR018731 Autophagy-related protein 13 | transcript=eq;prot=eq;pid=Medtr3g095570.1; | - | 3 | No |
OS11G06320 | osa | expressed protein | transcript=eq;prot=eq; | - | 11 | No |
OSINDICA_11G05140 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC034264; | - | Chr11 | No |
PT01G30970 | ptr | PACid=17306213;name=POPTR_0001s31730;alias=pt037757m; | transcript=eq;prot=eq;protein_id=17306213; | + | scaffold_1 | No |
PT19G02410 | ptr | PACid=17309802;name=POPTR_0019s02600;alias=pt009775m,eugene3.01850004; | transcript=eq;prot=eq;protein_id=17309802; | - | scaffold_19 | No |
RC30206G00020 | rco | name=30206.m000754;gene=30206.t000002;note=30206.t000002;transcript=eq;prot=eq | - | 30206 | No | |
SB05G003870 | sbi | 5 | prot=eq;pid=5056388;tid=5056388 | - | chr_5 | No |
TC01G010940 | tca | RNAname=Tc01_t010940;GeneName=Tc01_g010940;transcript=eq;prot=eq | + | Tc01 | No | |
VV04G05650 | vvi | name=GSVIVG01026577001; | transcript=eq;prot=eq;name=GSVIVG01026577001;pid=GSVIVG01026577001;tid=GSVIVT01026577001; | + | chr4 | No |
ZM02G24020 | zma | hypothetical protein LOC100193032 | name=GRMZM2G125352;tid=GRMZM2G125352_T01;pid=GRMZM2G125352_P01;transcript=ne;prot=eq; | - | 2 | No |