Sub-family  

Parent family
HOM002097
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO008544 has 21 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G20350 aly name=Al_scaffold_0003_1980;pid=873339;prot=eq;tid=904852 - scaffold_3 No
AT3G18770 ath Autophagy-related protein 13; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G49590.1); Has 480 Blast hits to 395 proteins in 141 species: Archae - 0; Bacteria - 18; Metazoa - 72; Fungi - 154; Plants - 106; Viruses - 7; Other Eukaryotes - 123 (source: NCBI BLink).;Autophagy-related protein 13 transcript=eq;prot=eq; - 3 No
BD4G24767 bdi pid=Bradi4g24767.1;tid=Bradi4g24767.1;GeneName=Bradi4g24767;transcript=eq;prot=eq + Bd4 No
FV7G03720 fve Autophagy-related protein 13 (probable) transcript=eq;prot=eq;pid=gene18563 - LG7 No
GM05G32250 gma 05 pid=16260401;transcript=eq;prot=eq;name=Glyma05g32250.1 + Gm05 No
GM08G15500 gma 08 pid=16271274;transcript=eq;prot=eq;name=Glyma08g15500.1 + Gm08 No
LJ0G078870 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_026422;name=LjSGA_026422.1 + LjSGA_026422 No
MD01G001570 mdo transcript=eq;prot=eq;pid=MDP0000321294;tid=MDP0000321294;contig=MDC012407.352 - 1 No
ME00185G00020 mes PACid=17970259;RNAname=cassava4.1_024177m;GeneName=cassava4.1_024177m.g;transcript=eq;prot=eq - scaffold00185 No
ME06948G00180 mes PACid=17973629;RNAname=cassava4.1_003899m;GeneName=cassava4.1_003899m.g;transcript=eq;prot=eq + scaffold06948 No
MT3G095570 mtr Autophagy-related protein 13 (AHRD V1 *-*- Q6BQ20); contains Interpro domain(s) IPR018731 Autophagy-related protein 13 transcript=eq;prot=eq;pid=Medtr3g095570.1; - 3 No
OS11G06320 osa expressed protein transcript=eq;prot=eq; - 11 No
OSINDICA_11G05140 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC034264; - Chr11 No
PT01G30970 ptr PACid=17306213;name=POPTR_0001s31730;alias=pt037757m; transcript=eq;prot=eq;protein_id=17306213; + scaffold_1 No
PT19G02410 ptr PACid=17309802;name=POPTR_0019s02600;alias=pt009775m,eugene3.01850004; transcript=eq;prot=eq;protein_id=17309802; - scaffold_19 No
RC30206G00020 rco name=30206.m000754;gene=30206.t000002;note=30206.t000002;transcript=eq;prot=eq - 30206 No
SB05G003870 sbi 5 prot=eq;pid=5056388;tid=5056388 - chr_5 No
TC01G010940 tca RNAname=Tc01_t010940;GeneName=Tc01_g010940;transcript=eq;prot=eq + Tc01 No
VV04G05650 vvi name=GSVIVG01026577001; transcript=eq;prot=eq;name=GSVIVG01026577001;pid=GSVIVG01026577001;tid=GSVIVT01026577001; + chr4 No
ZM02G24020 zma hypothetical protein LOC100193032 name=GRMZM2G125352;tid=GRMZM2G125352_T01;pid=GRMZM2G125352_P01;transcript=ne;prot=eq; - 2 No
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