Sub-family  

Parent family
HOM001240
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO008542 has 21 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G19910 aly name=fgenesh2_kg.3__2039__AT3G18380.2;pid=479338;prot=eq;tid=479338 - scaffold_3 No
AT3G18380 ath sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;sequence-specific DNA binding transcription factors;sequence-specific DNA binding transcript=eq;prot=eq; - 3 No
BD1G42040 bdi pid=Bradi1g42040.1;tid=Bradi1g42040.1;GeneName=Bradi1g42040;transcript=eq;prot=eq - Bd1 No
FV3G17850 fve WUSCHEL-related homeobox 8 (probable) transcript=eq;prot=eq;pid=gene27205 - LG3 No
GM06G35560 gma 06 pid=16264304;transcript=eq;prot=eq;name=Glyma06g35560.1 - Gm06 No
GM12G18490 gma 12 pid=16287811;transcript=eq;prot=eq;name=Glyma12g18490.1 + Gm12 No
LJ3G003750 lja prot=eq;transcript=eq;scaffold=CM0282;name=chr3.CM0282.620.nc + chr3 No
ME10673G00070 mes PACid=17976590;RNAname=cassava4.1_011330m;GeneName=cassava4.1_011330m.g;transcript=eq;prot=eq - scaffold10673 No
MT8G061040 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001356 Homeobox transcript=eq;prot=eq;pid=Medtr8g061040.1; - 8 No
OSINDICA_06G25310 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC010743; - Chr06 No
OSINDICA_06G25410 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC010748; - Chr06 No
PP00044G01370 ppa NULL name=e_gw1.44.141.1,pid=123285,prot=eq,tid=123285 + scaffold_44 No
PT01G37470 ptr PACid=17332734;name=POPTR_0001s38230;alias=pt039707m; transcript=eq;prot=eq;protein_id=17332734; - scaffold_1 No
PT11G09220 ptr PACid=17305894;name=POPTR_0011s09980;alias=pt014553m; transcript=eq;prot=eq;protein_id=17305894; + scaffold_11 No
RC30209G00090 rco name=30209.m001510;gene=30209.t000009;note=30209.t000009;transcript=eq;prot=eq - 30209 No
SB02G020940 sbi 2 prot=eq;pid=5051037;tid=5051037 - chr_2 No
SM00004G01740 smo proteinId=405582;transcriptId=405582;name=fgenesh2_pg.C_scaffold_4000156;transcript=eq;prot=eq - scaffold_4 No
TC07G008950 tca RNAname=Tc07_t008950;GeneName=Tc07_g008950;transcript=eq;prot=eq - Tc07 No
VV19G02280 vvi name=GSVIVG01014258001; transcript=eq;prot=eq;name=GSVIVG01014258001;pid=GSVIVG01014258001;tid=GSVIVT01014258001; + chr19 No
ZM02G29330 zma hypothetical protein LOC100279552 name=GRMZM2G111204;tid=GRMZM2G111204_T01;pid=GRMZM2G111204_P01;transcript=eq;prot=eq; - 2 No
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