Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008506 has 21 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G05100 aly name=fgenesh2_kg.3__513__AT3G05250.1;pid=477812;prot=eq;tid=477812 + scaffold_3 No
AT3G05250 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 547 Blast hits to 545 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 32; Plants - 178; Viruses - 65; Other Eukaryotes - 43 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
BD1G04550 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi1g04550.1;tid=Bradi1g04550.1;GeneName=Bradi1g04550;transcript=eq;prot=eq - Bd1 No
CP00048G00330 cpa name=evm.TU.supercontig_48.33;pid=evm.TU.supercontig_48.33;prot=eq;transcript=eq + supercontig_48 No
FV6G06010 fve E3 ubiquitin-protein ligase Topors (p53-binding protein 3) (probable) transcript=eq;prot=eq;pid=gene22573 - LG6 No
GM10G29650 gma 10 pid=16280371;transcript=eq;prot=eq;name=Glyma10g29650.1 - Gm10 No
GM20G37650 gma 20 pid=16318197;transcript=eq;prot=eq;name=Glyma20g37650.1 + Gm20 No
LJ0G198250 lja prot=eq;transcript=eq;scaffold=LjSGA_063277;name=LjSGA_063277.1.1 - LjSGA_063277 No
MD04G016950 mdo transcript=eq;prot=eq;pid=MDP0000295300;tid=MDP0000295300;contig=MDC012556.308 - 4 No
ME09319G00010 mes PACid=17990485;RNAname=cassava4.1_024789m;GeneName=cassava4.1_024789m.g;transcript=ne;prot=eq + scaffold09319 No
MT1G082740 mtr E3 ubiquitin-protein ligase Topors (AHRD V1 *-*- Q9NS56); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type transcript=eq;prot=eq;pid=Medtr1g082740.1; + 1 No
OS03G59540 osa zinc finger, C3HC4 type domain containing protein, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G56880 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC008701; - Chr03 No
PP00376G00040 ppa NULL name=e_gw1.376.55.1,pid=152792,prot=eq,tid=152792 + scaffold_376 No
PT00G20870 ptr PACid=17316709;name=POPTR_0258s00210;alias=pt002523m; transcript=eq;prot=eq;protein_id=17316709; + scaffold_258 No
PT05G03580 ptr PACid=17345341;name=POPTR_0005s03770;alias=pt033587m,eugene3.00700226,Pt-RZF.2; transcript=eq;prot=eq;protein_id=17345341; - scaffold_5 No
RC30128G01510 rco name=30128.m008758;gene=30128.t000219;note=30128.t000219;transcript=eq;prot=eq + 30128 No
SB01G004016 sbi 1 prot=eq;pid=5028101;tid=5028101 + chr_1 No
TC05G029550 tca RNAname=Tc05_t029550;GeneName=Tc05_g029550;transcript=eq;prot=eq - Tc05 No
VV14G00260 vvi name=GSVIVG01000035001; transcript=eq;prot=eq;name=GSVIVG01000035001;pid=GSVIVG01000035001;tid=GSVIVT01000035001; + chr14 No
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