Sub-family  

Parent family
HOM000008
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (10 genes)



The gene family ORTHO008457 has 21 genes in 2 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 21 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G08800 aly name=Al_scaffold_0002_821;pid=876227;prot=eq;tid=907740 + scaffold_2 No
AL3G09890 aly name=Al_scaffold_0003_967;pid=872326;prot=eq;tid=903839 - scaffold_3 No
AL5G08380 aly name=Al_scaffold_0005_801;pid=865322;prot=eq;tid=896835 - scaffold_5 No
AL6G30710 aly name=fgenesh2_kg.6__2885__AT4G08450.1;pid=489751;prot=eq;tid=489751 + scaffold_6 No
AL8G01660 aly name=Al_scaffold_0008_167;pid=883903;prot=eq;tid=915416 - scaffold_8 No
AL8G01730 aly name=Al_scaffold_0008_174;pid=883910;prot=eq;tid=915423 - scaffold_8 No
AL8G01740 aly name=Al_scaffold_0008_175;pid=883911;prot=eq;tid=915424 - scaffold_8 No
AL8G01750 aly name=Al_scaffold_0008_176;pid=883912;prot=eq;tid=915425 - scaffold_8 No
AL8G01780 aly name=fgenesh2_kg.8__141__AT5G46470.1;pid=494325;prot=eq;tid=494325 - scaffold_8 No
AL8G02010 aly name=fgenesh2_kg.8__162__AT5G46260.1;pid=494346;prot=eq;tid=494346 + scaffold_8 No
AL8G08320 aly name=Al_scaffold_0008_806;pid=884542;prot=eq;tid=916055 + scaffold_8 No
AT1G31540 ath Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; - 1 No
AT4G08450 ath Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 55059 Blast hits to 21265 proteins in 952 species: Archae - 84; Bacteria - 24337; Metazoa - 4372; Fungi - 1058; Plants - 20302; Viruses - 196; Other Eukaryotes - 4710 (source: NCBI BLink).;Disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; + 4 No
AT5G22690 ath Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 15956 Blast hits to 11549 proteins in 387 species: Archae - 12; Bacteria - 480; Metazoa - 758; Fungi - 10; Plants - 14383; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).;Disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; + 5 No
AT5G40060 ath Disease resistance protein (NBS-LRR class) family; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 17753 Blast hits to 12088 proteins in 513 species: Archae - 14; Bacteria - 834; Metazoa - 1404; Fungi - 80; Plants - 14776; Viruses - 4; Other Eukaryotes - 641 (source: NCBI BLink).;Disease resistance protein (NBS-LRR class) family transcript=eq;prot=eq; + 5 No
AT5G46260 ath disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; - 5 No
AT5G46270 ath Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 19108 Blast hits to 13517 proteins in 561 species: Archae - 10; Bacteria - 780; Metazoa - 1004; Fungi - 46; Plants - 16614; Viruses - 15; Other Eukaryotes - 639 (source: NCBI BLink).;Disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; - 5 No
AT5G46450 ath Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; + 5 No
AT5G46470 ath Encodes RPS6 (RESISTANT TO P. SYRINGAE 6), a member of the TIR-NBS-LRR class resistance protein.;disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; + 5 No
AT5G46510 ath Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Disease resistance protein (TIR-NBS-LRR class) family transcript=eq;prot=eq; + 5 No
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