Sub-family  

Parent family
HOM000101
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008176 has 22 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G04570 aly name=scaffold_800493.1;pid=917093;prot=eq;tid=948606 + scaffold_8 No
AT5G44800 ath chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink).;chromatin remodeling 4 transcript=eq;prot=eq; - 5 No
BD1G26940 bdi ATP-dependent DNA helicase activity (Blast2GO) pid=Bradi1g26940.1;tid=Bradi1g26940.1;GeneName=Bradi1g26940;transcript=eq;prot=eq + Bd1 No
CP00030G01230 cpa name=evm.TU.supercontig_30.123;pid=evm.TU.supercontig_30.123;prot=eq;transcript=eq - supercontig_30 No
FV3G11050 fve CHD3-type chromatin-remodeling factor PICKLE (probable) transcript=eq;prot=eq;pid=gene20001 + LG3 No
GM05G26180 gma 05 pid=16259684;transcript=eq;prot=eq;name=Glyma05g26180.1 + Gm05 No
GM08G09120 gma 08 pid=16270496;transcript=eq;prot=eq;name=Glyma08g09120.1 + Gm08 No
ME00204G00040 mes PACid=17990530;RNAname=cassava4.1_001403m;GeneName=cassava4.1_001403m.g;transcript=eq;prot=eq - scaffold00204 No
ME00204G00050 mes PACid=17990533;RNAname=cassava4.1_034286m;GeneName=cassava4.1_034286m.g;transcript=eq;prot=eq - scaffold00204 No
MT4G096930 mtr Chromodomain-helicase-DNA-binding protein 5 (AHRD V1 **** Q8TDI0); contains Interpro domain(s) IPR000330 SNF2-related transcript=eq;warning:contains inframe stop codonspid=Medtr4g096930.1; + 4 No
OS07G31450 osa CHR4%2FMI%2D2%2DLIKE, putative, expressed transcript=eq;prot=eq; - 7 No
OSINDICA_07G24580 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC023733; - Chr07 No
PP00223G00550 ppa NULL name=e_gw1.223.67.1,pid=145079,prot=eq,tid=145079 - scaffold_223 No
PT01G00360 ptr PACid=17346295;name=POPTR_0001s00550;alias=pt037151m,eugene3.01270078,CHR906; transcript=eq;prot=eq;protein_id=17346295; - scaffold_1 No
PT03G10000 ptr PACid=17307734;name=POPTR_0003s10950;alias=pt022607m,eugene3.00030822,CHR926; transcript=eq;prot=eq;protein_id=17307734; + scaffold_3 No
RC29840G00220 rco name=29840.m000626;gene=29840.t000024;note=29840.t000024;transcript=eq;prot=eq + 29840 No
SB02G033850 sbi 2 prot=eq;pid=5034360;tid=5034360 + chr_2 No
SB02G033860 sbi 2 prot=eq;pid=5051695;tid=5051695 + chr_2 No
SM00101G00340 smo proteinId=130534;transcriptId=130534;name=e_gw1.101.4.1;transcript=eq;prot=eq + scaffold_101 No
TC02G000580 tca RNAname=Tc02_t000580;GeneName=Tc02_g000580;transcript=eq;prot=eq - Tc02 No
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