Sub-family  

Parent family
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008062 has 22 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G24010 aly name=fgenesh2_kg.6__2403__AT5G24120.1;pid=489269;prot=eq;tid=489269 - scaffold_6 No
AT5G24120 ath Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.;sigma factor E transcript=eq;prot=eq; - 5 No
BD2G14790 bdi pid=Bradi2g14790.1;tid=Bradi2g14790.1;GeneName=Bradi2g14790;transcript=eq;prot=eq - Bd2 No
CP00003G00550 cpa name=evm.TU.supercontig_3.55;pid=evm.TU.supercontig_3.55;prot=eq;transcript=eq + supercontig_3 No
FV7G36900 fve RNA polymerase sigma factor rpoD (Sigma-A) (probable) transcript=eq;prot=eq;pid=gene13107 - LG7 No
GM06G13100 gma 06 pid=16262754;transcript=eq;prot=eq;name=Glyma06g13100.1 + Gm06 No
GM13G08390 gma 13 pid=16290032;transcript=eq;prot=eq;name=Glyma13g08390.1 - Gm13 No
GM14G31370 gma 14 pid=16296228;transcript=eq;prot=eq;name=Glyma14g31370.1 - Gm14 No
MD07G019640 mdo transcript=eq;prot=eq;pid=MDP0000831937;tid=MDP0000831937;contig=MDC002657.162 + 7 No
ME00341G00240 mes PACid=17960803;RNAname=cassava4.1_006359m;GeneName=cassava4.1_006359m.g;transcript=eq;prot=eq - scaffold00341 No
ME06089G00260 mes PACid=17990007;RNAname=cassava4.1_006073m;GeneName=cassava4.1_006073m.g;transcript=eq;prot=eq - scaffold06089 No
MT3G090900 mtr RNA polymerase sigma factor rpoD (AHRD V1 *-*- P26683); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 transcript=eq;prot=eq;pid=Medtr3g090900.1; + 3 No
OS05G50930 osa RNA polymerase sigma factor, putative, expressed transcript=eq;prot=eq; + 5 No
OSINDICA_05G45240 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC022234; + Chr05 No
PP00092G00240 ppa NULL name=fgenesh2_pg.scaffold_92000013,pid=230140,prot=eq,tid=230140 - scaffold_92 No
PT12G01240 ptr PACid=17313923;name=POPTR_0012s01430;alias=pt015748m,eugene3.03830006,Pt-SIGE.3; transcript=eq;prot=eq;protein_id=17313923; - scaffold_12 No
RC30169G03030 rco name=30169.m006532;gene=30169.t000309;note=30169.t000309;transcript=eq;prot=eq - 30169 No
SB09G030110 sbi 9 prot=eq;pid=5061058;tid=5061058 + chr_9 No
SM00035G02480 smo proteinId=53596;transcriptId=53596;name=gw1.35.481.1;transcript=eq;prot=eq - scaffold_35 No
TC03G017540 tca RNAname=Tc03_t017540;GeneName=Tc03_g017540;transcript=eq;prot=eq - Tc03 No
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