Sub-family  

Parent family
HOM000577
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO008053 has 22 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G20510 aly name=fgenesh2_kg.6__2058__AT5G20190.1;pid=488924;prot=eq;tid=488924 + scaffold_6 No
AT5G20190 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 5 No
BD1G36490 bdi pid=Bradi1g36490.1;tid=Bradi1g36490.1;GeneName=Bradi1g36490;transcript=eq;prot=eq - Bd1 No
CP00046G00110 cpa name=evm.TU.supercontig_46.11;pid=evm.TU.supercontig_46.11;prot=eq;transcript=eq + supercontig_46 No
FV1G05430 fve Transmembrane and TPR repeat-containing protein CG4341 (probable) transcript=eq;prot=eq;pid=gene31052 - LG1 No
GM13G23470 gma 13 pid=16291300;transcript=eq;prot=eq;name=Glyma13g23470.1 - Gm13 No
GM17G12240 gma 17 pid=16305307;transcript=eq;prot=eq;name=Glyma17g12240.1 - Gm17 No
MD00G465500 mdo transcript=eq;prot=eq;pid=MDP0000222628;tid=MDP0000222628;contig=MDC021557.174 - MDC021557.174 No
MD02G003050 mdo transcript=eq;prot=eq;pid=MDP0000145486;tid=MDP0000145486;contig=MDC020314.68 - 2 No
MD15G010560 mdo transcript=eq;prot=eq;pid=MDP0000204348;tid=MDP0000204348;contig=MDC011918.245 - 15 No
ME05884G00010 mes PACid=17970668;RNAname=cassava4.1_012837m;GeneName=cassava4.1_012837m.g;transcript=ne;prot=eq + scaffold05884 No
ME07478G00090 mes PACid=17984911;RNAname=cassava4.1_012680m;GeneName=cassava4.1_012680m.g;transcript=eq;prot=eq - scaffold07478 No
MT4G114690 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical transcript=eq;prot=eq;pid=Medtr4g114690.1; + 4 No
OS06G40440 osa expressed protein transcript=eq;prot=eq; + 6 No
PT06G06550 ptr PACid=17319137;name=POPTR_0006s06740;alias=pt018275m,estExt_fgenesh4_pg.C_LG_VI0496; transcript=eq;prot=eq;protein_id=17319137; - scaffold_6 No
PT18G12070 ptr PACid=17345840;name=POPTR_0018s13020;alias=pt008854m; transcript=eq;prot=eq;protein_id=17345840; - scaffold_18 No
PT18G12090 ptr PACid=17336708;name=POPTR_0018s13040;alias=pt008851m,grail3.0073007101; transcript=eq;prot=eq;protein_id=17336708; - scaffold_18 No
RC29927G00390 rco name=29927.m000629;gene=29927.t000039;note=29927.t000039;transcript=eq;prot=eq - 29927 No
SB10G023690 sbi 10 prot=eq;pid=5061902;tid=5061902 + chr_10 No
TC09G011490 tca RNAname=Tc09_t011490;GeneName=Tc09_g011490;transcript=eq;prot=eq + Tc09 No
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