Sub-family  

Parent family
HOM005648
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO007978 has 22 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G21960 aly name=fgenesh2_kg.5__1579__AT3G52210.3;pid=485587;prot=eq;tid=485587 + scaffold_5 No
AT3G52210 ath S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; + 3 No
BD5G16280 bdi mRNA (guanine-N7-)-methyltransferase activity (Blast2GO) pid=Bradi5g16280.2;tid=Bradi5g16280.2;GeneName=Bradi5g16280;transcript=eq;prot=eq + Bd5 No
CP00128G00590 cpa name=evm.TU.supercontig_128.59;pid=evm.TU.supercontig_128.59;prot=eq;transcript=eq + supercontig_128 No
FV7G22570 fve mRNA cap guanine-N7 methyltransferase 2 (putative) transcript=eq;prot=eq;pid=gene23413 + LG7 No
GM04G41590 gma 04 pid=16257543;transcript=eq;prot=eq;name=Glyma04g41590.1 - Gm04 No
GM06G13240 gma 06 pid=16262777;transcript=eq;prot=eq;name=Glyma06g13240.1 + Gm06 No
LJ1G011310 lja partial;prot=eq;transcript=eq;scaffold=CM0496;name=chr1.CM0496.370.nd + chr1 No
MD00G182580 mdo transcript=eq;prot=eq;pid=MDP0000258905;tid=MDP0000258905;contig=MDC007841.281 - MDC007841.281 No
ME04116G00140 mes PACid=17978348;RNAname=cassava4.1_010052m;GeneName=cassava4.1_010052m.g;transcript=eq;prot=eq - scaffold04116 No
MT3G091140 mtr mRNA cap guanine-N7 methyltransferase 2 (AHRD V1 ***- Q5HZ60); contains Interpro domain(s) IPR004971 mRNA capping enzyme, large subunit transcript=eq;prot=eq;pid=Medtr3g091140.1; + 3 No
OS02G54000 osa mRNA cap guanine%2DN7 methyltransferase 2, putative, expressed transcript=eq;prot=eq; + 2 No
OSINDICA_02G52290 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC015621; + Chr02 No
PP00407G00180 ppa NULL name=e_gw1.407.28.1,pid=153981,prot=eq,tid=153981 - scaffold_407 No
PT10G22790 ptr PACid=17319181;name=POPTR_0010s23930;alias=pt012092m; transcript=eq;prot=eq;protein_id=17319181; + scaffold_10 No
RC27428G00020 rco name=27428.m000107;gene=27428.t000002;note=27428.t000002;transcript=eq;prot=eq - 27428 No
SB06G023140 sbi 6 prot=eq;pid=5057552;tid=5057552 + chr_6 No
SM00023G00940 smo proteinId=414216;transcriptId=414216;name=fgenesh2_pg.C_scaffold_23000080;transcript=eq;prot=eq - scaffold_23 No
TC00G016390 tca RNAname=Tc00_t016390;GeneName=Tc00_g016390;transcript=eq;prot=eq + Tc00 No
VV13G11580 vvi name=GSVIVG01034681001; transcript=eq;prot=eq;name=GSVIVG01034681001;pid=GSVIVG01034681001;tid=GSVIVT01034681001; + chr13 No
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