Sub-family 
- Id
- ORTHO007968
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM001448
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (1 gene)
- lja
- Lotus japonicus (2 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO007968 has 22 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO007968
Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL5G17270 | aly | name=fgenesh1_pg.C_scaffold_5001324;pid=347932;prot=eq;tid=347932 | + | scaffold_5 | No | |
| AT3G48425 | ath | DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 5913 Blast hits to 5912 proteins in 1998 species: Archae - 119; Bacteria - 3923; Metazoa - 218; Fungi - 82; Plants - 109; Viruses - 0; Other Eukaryotes - 1462 (source: NCBI BLink).;DNAse I-like superfamily protein | transcript=eq;prot=eq; | + | 3 | No |
| BD4G39120 | bdi | exodeoxyribonuclease activity, producing 5'-phosphomonoesters (Blast2GO) | pid=Bradi4g39120.1;tid=Bradi4g39120.1;GeneName=Bradi4g39120;transcript=eq;prot=eq | + | Bd4 | No |
| CP45383G00010 | cpa | name=evm.TU.contig_45383.1;pid=evm.TU.contig_45383.1;prot=eq;transcript=eq | + | contig_45383 | No | |
| FV5G09500 | fve | DNA-(apurinic or apyrimidinic site) lyase (probable) | transcript=eq;prot=eq;pid=gene09902 | + | LG5 | No |
| GM04G36610 | gma | 04 | pid=16256958;transcript=eq;prot=eq;name=Glyma04g36610.1 | + | Gm04 | No |
| LJ1G006130 | lja | prot=eq;transcript=eq;scaffold=CM0174;name=chr1.CM0174.40.nd | + | chr1 | No | |
| LJ1G006190 | lja | partial;prot=eq;transcript=eq;scaffold=CM0174;name=chr1.CM0174.100.nd | - | chr1 | No | |
| ME10899G00170 | mes | PACid=17978105;RNAname=cassava4.1_024024m;GeneName=cassava4.1_024024m.g;transcript=eq;prot=eq | + | scaffold10899 | No | |
| MRCC299_11G00780 | mrcc299 | name=e_gw2.11.248.1;pid=86589;prot=eq;tid=86589;transcript=eq | - | Chr_11 | No | |
| MT0G37280 | mtr | DNA-(apurinic or apyrimidinic site) lyase (AHRD V1 **** P51173); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth | transcript=eq;prot=eq;pid=AC235753_19.1; | + | AC235753.2 | No |
| OL10G00390 | olu | NULL | name=fgenesh1_pg.C_Chr_10000034,pid=16969,prot=eq,tid=16969 | - | Chr_10 | No |
| OS12G18200 | osa | endonuclease%2Fexonuclease%2Fphosphatase family domain containing protein, expressed | transcript=eq;prot=eq; | - | 12 | No |
| OSINDICA_12G12430 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC032648; | - | Chr12 | No |
| OT10G00380 | ota | Apurinic/apyrimidinic endonuclease and related enzymes (ISS); | name=OT10G00380;protein_id=CAL55995.1;prot=eq | - | chrom10 | No |
| PP00101G00720 | ppa | NULL | name=estExt_gwp_gw1.C_1010086,pid=187119,prot=eq,tid=187119 | - | scaffold_101 | No |
| PT15G09080 | ptr | PACid=17304147;name=POPTR_0015s10030;alias=pt000696m,eugene3.00150677; | transcript=eq;prot=eq;protein_id=17304147; | + | scaffold_15 | No |
| RC30147G04890 | rco | name=30147.m013815;gene=30147.t000086;note=30147.t000086;transcript=eq;prot=eq | - | 30147 | No | |
| SB07G002730 | sbi | 7 | prot=eq;pid=5042992;tid=5042992 | + | chr_7 | No |
| TC03G014090 | tca | RNAname=Tc03_t014090;GeneName=Tc03_g014090;transcript=eq;prot=eq | + | Tc03 | No |