Sub-family  

Parent family
HOM001448
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO007968 has 22 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G17270 aly name=fgenesh1_pg.C_scaffold_5001324;pid=347932;prot=eq;tid=347932 + scaffold_5 No
AT3G48425 ath DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 5913 Blast hits to 5912 proteins in 1998 species: Archae - 119; Bacteria - 3923; Metazoa - 218; Fungi - 82; Plants - 109; Viruses - 0; Other Eukaryotes - 1462 (source: NCBI BLink).;DNAse I-like superfamily protein transcript=eq;prot=eq; + 3 No
BD4G39120 bdi exodeoxyribonuclease activity, producing 5'-phosphomonoesters (Blast2GO) pid=Bradi4g39120.1;tid=Bradi4g39120.1;GeneName=Bradi4g39120;transcript=eq;prot=eq + Bd4 No
CP45383G00010 cpa name=evm.TU.contig_45383.1;pid=evm.TU.contig_45383.1;prot=eq;transcript=eq + contig_45383 No
FV5G09500 fve DNA-(apurinic or apyrimidinic site) lyase (probable) transcript=eq;prot=eq;pid=gene09902 + LG5 No
GM04G36610 gma 04 pid=16256958;transcript=eq;prot=eq;name=Glyma04g36610.1 + Gm04 No
LJ1G006130 lja prot=eq;transcript=eq;scaffold=CM0174;name=chr1.CM0174.40.nd + chr1 No
LJ1G006190 lja partial;prot=eq;transcript=eq;scaffold=CM0174;name=chr1.CM0174.100.nd - chr1 No
ME10899G00170 mes PACid=17978105;RNAname=cassava4.1_024024m;GeneName=cassava4.1_024024m.g;transcript=eq;prot=eq + scaffold10899 No
MRCC299_11G00780 mrcc299 name=e_gw2.11.248.1;pid=86589;prot=eq;tid=86589;transcript=eq - Chr_11 No
MT0G37280 mtr DNA-(apurinic or apyrimidinic site) lyase (AHRD V1 **** P51173); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth transcript=eq;prot=eq;pid=AC235753_19.1; + AC235753.2 No
OL10G00390 olu NULL name=fgenesh1_pg.C_Chr_10000034,pid=16969,prot=eq,tid=16969 - Chr_10 No
OS12G18200 osa endonuclease%2Fexonuclease%2Fphosphatase family domain containing protein, expressed transcript=eq;prot=eq; - 12 No
OSINDICA_12G12430 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC032648; - Chr12 No
OT10G00380 ota Apurinic/apyrimidinic endonuclease and related enzymes (ISS); name=OT10G00380;protein_id=CAL55995.1;prot=eq - chrom10 No
PP00101G00720 ppa NULL name=estExt_gwp_gw1.C_1010086,pid=187119,prot=eq,tid=187119 - scaffold_101 No
PT15G09080 ptr PACid=17304147;name=POPTR_0015s10030;alias=pt000696m,eugene3.00150677; transcript=eq;prot=eq;protein_id=17304147; + scaffold_15 No
RC30147G04890 rco name=30147.m013815;gene=30147.t000086;note=30147.t000086;transcript=eq;prot=eq - 30147 No
SB07G002730 sbi 7 prot=eq;pid=5042992;tid=5042992 + chr_7 No
TC03G014090 tca RNAname=Tc03_t014090;GeneName=Tc03_g014090;transcript=eq;prot=eq + Tc03 No
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