Sub-family  

Parent family
HOM000031
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family ORTHO007880 has 22 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G09450 aly name=scaffold_400951.1;pid=901450;prot=eq;tid=932963 - scaffold_4 No
AT2G26690 ath Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.1 (TAIR:AT1G12110.1); Has 7265 Blast hits to 7134 proteins in 1412 species: Archae - 0; Bacteria - 3658; Metazoa - 494; Fungi - 438; Plants - 2171; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).;Major facilitator superfamily protein transcript=eq;prot=eq; - 2 No
BD2G41060 bdi peptide:hydrogen symporter activity (Blast2GO) pid=Bradi2g41060.1;tid=Bradi2g41060.1;GeneName=Bradi2g41060;transcript=eq;prot=eq + Bd2 No
CP28770G00020 cpa name=evm.TU.contig_28770.2;pid=evm.TU.contig_28770.2;prot=eq;transcript=eq + contig_28770 No
FV1G05730 fve Nitrate/chlorate transporter (similar to) transcript=eq;prot=eq;pid=gene31023 - LG1 No
GM13G23680 gma 13 pid=16291327;transcript=eq;prot=eq;name=Glyma13g23680.1 - Gm13 No
GM17G12420 gma 17 pid=16305329;transcript=eq;prot=eq;name=Glyma17g12420.1 - Gm17 No
MD00G018270 mdo transcript=eq;prot=eq;pid=MDP0000163192;tid=MDP0000163192;contig=MDC000765.410 + MDC000765.410 No
MD15G010880 mdo transcript=eq;prot=eq;pid=MDP0000222929;tid=MDP0000222929;contig=MDC022544.274 - 15 No
ME07478G00250 mes PACid=17984941;RNAname=cassava4.1_004364m;GeneName=cassava4.1_004364m.g;transcript=eq;prot=eq - scaffold07478 No
MT4G114340 mtr Nitrate transporter (AHRD V1 **** Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region transcript=eq;prot=eq;pid=Medtr4g114340.1; + 4 No
OS01G37590 osa peptide transporter PTR2, putative, expressed transcript=eq;prot=eq; + 1 No
OSINDICA_01G34860 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC036732; + Chr01 No
PP00298G00250 ppa NULL name=estExt_Genewise1.C_2980027,pid=224736,prot=eq,tid=224736 + scaffold_298 No
RC28320G00460 rco name=28320.m001119;gene=28320.t000046;note=28320.t000046;transcript=eq;prot=eq + 28320 No
TC09G002440 tca RNAname=Tc09_t002440;GeneName=Tc09_g002440;transcript=eq;prot=eq - Tc09 No
TC09G011230 tca RNAname=Tc09_t011230;GeneName=Tc09_g011230;transcript=eq;prot=eq + Tc09 No
TC09G011240 tca RNAname=Tc09_t011240;GeneName=Tc09_g011240;transcript=eq;prot=eq + Tc09 No
VV11G06340 vvi name=GSVIVG01015522001; transcript=eq;prot=eq;name=GSVIVG01015522001;pid=GSVIVG01015522001;tid=GSVIVT01015522001; + chr11 No
VV11G06350 vvi name=GSVIVG01015523001; transcript=eq;prot=eq;name=GSVIVG01015523001;pid=GSVIVG01015523001;tid=GSVIVT01015523001; + chr11 No
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