Sub-family 
- Id
- ORTHO007880
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000031
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- rco
- Ricinus communis (1 gene)
- tca
- Theobroma cacao (3 genes)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (2 genes)
The gene family ORTHO007880 has 22 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO007880
Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL4G09450 | aly | name=scaffold_400951.1;pid=901450;prot=eq;tid=932963 | - | scaffold_4 | No | |
| AT2G26690 | ath | Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.1 (TAIR:AT1G12110.1); Has 7265 Blast hits to 7134 proteins in 1412 species: Archae - 0; Bacteria - 3658; Metazoa - 494; Fungi - 438; Plants - 2171; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).;Major facilitator superfamily protein | transcript=eq;prot=eq; | - | 2 | No |
| BD2G41060 | bdi | peptide:hydrogen symporter activity (Blast2GO) | pid=Bradi2g41060.1;tid=Bradi2g41060.1;GeneName=Bradi2g41060;transcript=eq;prot=eq | + | Bd2 | No |
| CP28770G00020 | cpa | name=evm.TU.contig_28770.2;pid=evm.TU.contig_28770.2;prot=eq;transcript=eq | + | contig_28770 | No | |
| FV1G05730 | fve | Nitrate/chlorate transporter (similar to) | transcript=eq;prot=eq;pid=gene31023 | - | LG1 | No |
| GM13G23680 | gma | 13 | pid=16291327;transcript=eq;prot=eq;name=Glyma13g23680.1 | - | Gm13 | No |
| GM17G12420 | gma | 17 | pid=16305329;transcript=eq;prot=eq;name=Glyma17g12420.1 | - | Gm17 | No |
| MD00G018270 | mdo | transcript=eq;prot=eq;pid=MDP0000163192;tid=MDP0000163192;contig=MDC000765.410 | + | MDC000765.410 | No | |
| MD15G010880 | mdo | transcript=eq;prot=eq;pid=MDP0000222929;tid=MDP0000222929;contig=MDC022544.274 | - | 15 | No | |
| ME07478G00250 | mes | PACid=17984941;RNAname=cassava4.1_004364m;GeneName=cassava4.1_004364m.g;transcript=eq;prot=eq | - | scaffold07478 | No | |
| MT4G114340 | mtr | Nitrate transporter (AHRD V1 **** Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region | transcript=eq;prot=eq;pid=Medtr4g114340.1; | + | 4 | No |
| OS01G37590 | osa | peptide transporter PTR2, putative, expressed | transcript=eq;prot=eq; | + | 1 | No |
| OSINDICA_01G34860 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC036732; | + | Chr01 | No |
| PP00298G00250 | ppa | NULL | name=estExt_Genewise1.C_2980027,pid=224736,prot=eq,tid=224736 | + | scaffold_298 | No |
| RC28320G00460 | rco | name=28320.m001119;gene=28320.t000046;note=28320.t000046;transcript=eq;prot=eq | + | 28320 | No | |
| TC09G002440 | tca | RNAname=Tc09_t002440;GeneName=Tc09_g002440;transcript=eq;prot=eq | - | Tc09 | No | |
| TC09G011230 | tca | RNAname=Tc09_t011230;GeneName=Tc09_g011230;transcript=eq;prot=eq | + | Tc09 | No | |
| TC09G011240 | tca | RNAname=Tc09_t011240;GeneName=Tc09_g011240;transcript=eq;prot=eq | + | Tc09 | No | |
| VV11G06340 | vvi | name=GSVIVG01015522001; | transcript=eq;prot=eq;name=GSVIVG01015522001;pid=GSVIVG01015522001;tid=GSVIVT01015522001; | + | chr11 | No |
| VV11G06350 | vvi | name=GSVIVG01015523001; | transcript=eq;prot=eq;name=GSVIVG01015523001;pid=GSVIVG01015523001;tid=GSVIVT01015523001; | + | chr11 | No |