Sub-family  

Parent family
HOM000982
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO007802 has 22 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G13630 aly name=Al_scaffold_0003_1340;pid=872699;prot=eq;tid=904212 - scaffold_3 No
AT3G13170 ath Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase.;Spo11/DNA topoisomerase VI, subunit A protein transcript=eq;prot=eq; - 3 No
BD1G08390 bdi ATP binding (Blast2GO) pid=Bradi1g08390.1;tid=Bradi1g08390.1;GeneName=Bradi1g08390;transcript=eq;prot=eq - Bd1 No
CP00012G01630 cpa name=evm.TU.supercontig_12.163;pid=evm.TU.supercontig_12.163;prot=eq;transcript=eq + supercontig_12 No
FV2G42610 fve Meiotic recombination protein SPO11-1 (AtSPO11-1) (similar to) transcript=eq;prot=eq;pid=gene23531 - LG2 No
GM02G46920 gma 02 pid=16250453;transcript=eq;prot=eq;name=Glyma02g46920.1 - Gm02 No
MD00G215230 mdo transcript=eq;prot=eq;pid=MDP0000187837;tid=MDP0000187837;contig=MDC009285.319 - MDC009285.319 No
MD11G016320 mdo transcript=eq;prot=eq;pid=MDP0000219568;tid=MDP0000219568;contig=MDC020446.50 + 11 No
ME03332G00650 mes PACid=17967472;RNAname=cassava4.1_027510m;GeneName=cassava4.1_027510m.g;transcript=eq;prot=eq - scaffold03332 No
MT5G095040 mtr Meiotic recombination protein SPO11-1 (AHRD V1 ***- Q9M4A2); contains Interpro domain(s) IPR002815 Spo11/DNA topoisomerase VI, subunit A transcript=eq;prot=eq;pid=Medtr5g095040.1; + 5 No
MT5G095090 mtr Meiotic recombination protein SPO11 (AHRD V1 ***- B6TWI5_MAIZE); contains Interpro domain(s) IPR002815 Spo11/DNA topoisomerase VI, subunit A transcript=eq;prot=eq;pid=Medtr5g095090.1; + 5 No
OS03G54091 osa OsTOP6A1 %2D Topoisomerase 6 subunit A homolog 1, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G51970 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC008347; + Chr03 No
PP00014G00440 ppa NULL name=e_gw1.14.107.1,pid=115757,prot=eq,tid=115757 - scaffold_14 No
PT01G36780 ptr PACid=17329982;name=POPTR_0001s37540;alias=pt039038m,eugene3.00012639; transcript=eq;prot=eq;protein_id=17329982; - scaffold_1 No
RC29629G00410 rco name=29629.m001391;gene=29629.t000042;note=29629.t000042;transcript=eq;prot=eq + 29629 No
SB01G007840 sbi 1 prot=eq;pid=5048125;tid=5048125 - chr_1 No
SM00051G01240 smo proteinId=115310;transcriptId=115310;name=e_gw1.51.375.1;transcript=eq;prot=eq + scaffold_51 No
SM00071G00070 smo proteinId=123469;transcriptId=123469;name=e_gw1.71.193.1;transcript=eq;prot=eq + scaffold_71 No
TC07G001390 tca RNAname=Tc07_t001390;GeneName=Tc07_g001390;transcript=eq;prot=eq + Tc07 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier