Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO007666 has 22 genes in 16 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G24350 aly name=Al_scaffold_0001_2383;pid=880616;prot=eq;tid=912129 + scaffold_1 No
AL6G31820 aly name=fgenesh2_kg.6__2957__AT4G09720.1;pid=489823;prot=eq;tid=489823 + scaffold_6 No
AT1G22740 ath GTP-binding protein Rab7;RAB GTPase homolog G3B transcript=eq;prot=eq; + 1 No
AT4G09720 ath RAB GTPase homolog G3A (RABG3A); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3B (TAIR:AT1G22740.1); Has 24309 Blast hits to 24289 proteins in 701 species: Archae - 21; Bacteria - 115; Metazoa - 12641; Fungi - 3212; Plants - 2866; Viruses - 20; Other Eukaryotes - 5434 (source: NCBI BLink).;RAB GTPase homolog G3A transcript=eq;prot=eq; + 4 No
BD2G18540 bdi GTPase activity (Blast2GO) pid=Bradi2g18540.1;tid=Bradi2g18540.1;GeneName=Bradi2g18540;transcript=eq;prot=eq - Bd2 No
BD2G48120 bdi GTPase activity (Blast2GO) pid=Bradi2g48120.1;tid=Bradi2g48120.1;GeneName=Bradi2g48120;transcript=eq;prot=eq - Bd2 No
CP00026G01250 cpa name=evm.TU.supercontig_26.125;pid=evm.TU.supercontig_26.125;prot=eq;transcript=eq - supercontig_26 No
FV2G20720 fve Ras-related protein Rab7 (similar to) transcript=eq;prot=eq;pid=gene27553 - LG2 No
GM10G36420 gma 10 pid=16281176;transcript=eq;prot=eq;name=Glyma10g36420.1 + Gm10 No
GM20G31150 gma 20 pid=16317458;transcript=eq;prot=eq;name=Glyma20g31150.1 - Gm20 No
MD15G009870 mdo transcript=eq;prot=eq;pid=MDP0000236542;tid=MDP0000236542;contig=MDC002768.331 - 15 No
ME06814G00700 mes PACid=17988187;RNAname=cassava4.1_022326m;GeneName=cassava4.1_022326m.g;transcript=eq;prot=eq + scaffold06814 No
ME07519G00360 mes PACid=17960069;RNAname=cassava4.1_016379m;GeneName=cassava4.1_016379m.g;transcript=eq;prot=eq + scaffold07519 No
MT0G09540 mtr Ras-related protein Rab7 (AHRD V1 ***- Q41640); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type transcript=eq;prot=eq;pid=AC225474_12.2; - AC225474.24 No
MT0G09710 mtr Ras-related protein Rab7 (AHRD V1 ***- Q41640); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type transcript=eq;prot=eq;pid=AC225474_12.3; - AC225474.24 No
OS05G46000 osa ras%2Drelated protein, putative, expressed transcript=eq;prot=eq; + 5 No
OSINDICA_05G40860 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC021918; + Chr05 No
PT02G06120 ptr PACid=17305776;name=POPTR_0002s06310;alias=pt021536m,Pt-RAB7.2,estExt_Genewise1_v1.C_LG_II2093; transcript=eq;prot=eq;protein_id=17305776; + scaffold_2 No
RC28644G00190 rco name=28644.m000913;gene=28644.t000020;note=28644.t000020;transcript=eq;prot=eq - 28644 No
SB03G032810 sbi 3 prot=eq;pid=5053607;tid=5053607 - chr_3 No
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