Sub-family  

Parent family
HOM000152
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO007657 has 22 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G22250 aly name=fgenesh2_kg.1__2292__AT1G20980.1;pid=472338;prot=eq;tid=472338 + scaffold_1 No
AL2G25530 aly name=scaffold_202615.1;pid=895541;prot=eq;tid=927054 + scaffold_2 No
AT1G20980 ath Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture.;squamosa promoter binding protein-like 14 transcript=eq;prot=eq; + 1 No
AT1G76580 ath Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 14 (TAIR:AT1G20980.1); Has 4275 Blast hits to 1172 proteins in 134 species: Archae - 0; Bacteria - 31; Metazoa - 161; Fungi - 128; Plants - 962; Viruses - 0; Other Eukaryotes - 2993 (source: NCBI BLink).;Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein transcript=eq;prot=eq; + 1 No
BD3G40240 bdi pid=Bradi3g40240.1;tid=Bradi3g40240.1;GeneName=Bradi3g40240;transcript=eq;prot=eq + Bd3 No
CP00036G01020 cpa name=evm.TU.supercontig_36.102;pid=evm.TU.supercontig_36.102;prot=eq;transcript=eq - supercontig_36 No
FV5G28030 fve Squamosa promoter-binding-like protein 14 (putative) transcript=eq;prot=eq;pid=gene29149 - LG5 No
GM07G19770 gma 07 pid=16267802;transcript=eq;prot=eq;name=Glyma07g19770.1 - Gm07 No
GM20G00900 gma 20 pid=16315098;transcript=eq;prot=eq;name=Glyma20g00900.1 - Gm20 No
MD06G000260 mdo transcript=eq;prot=eq;pid=MDP0000149339;tid=MDP0000149339;contig=MDC009921.235 - 6 No
ME01012G00040 mes PACid=17981350;RNAname=cassava4.1_000685m;GeneName=cassava4.1_000685m.g;transcript=eq;prot=eq + scaffold01012 No
MT1G035010 mtr Squamosa promoter binding-like protein (AHRD V1 *-** Q52UU1_9ROSI); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box transcript=eq;prot=eq;pid=Medtr1g035010.1; - 1 No
OS08G40260 osa OsSPL15 %2D SBP%2Dbox gene family member, expressed transcript=eq;prot=eq; + 8 No
OSINDICA_08G38760 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027288; + Chr08 No
PT02G00250 ptr PACid=17329039;name=POPTR_0002s00440;alias=pt019820m,fgenesh4_pm.C_LG_II000008; transcript=eq;prot=eq;protein_id=17329039; - scaffold_2 No
PT05G26870 ptr PACid=17306647;name=POPTR_0005s28010;alias=pt032157m; transcript=eq;prot=eq;protein_id=17306647; + scaffold_5 No
RC30170G07540 rco name=30170.m014245;gene=30170.t000657;note=30170.t000657;transcript=eq;prot=eq + 30170 No
SB07G027420 sbi 7 prot=eq;pid=5059084;tid=5059084 - chr_7 No
TC08G008260 tca RNAname=Tc08_t008260;GeneName=Tc08_g008260;transcript=eq;prot=eq - Tc08 No
VV18G13000 vvi name=GSVIVG01013452001; transcript=eq;prot=eq;name=GSVIVG01013452001;pid=GSVIVG01013452001;tid=GSVIVT01013452001; - chr18 No
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