Sub-family  

Parent family
HOM000032
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO007612 has 22 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 22 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01150 aly name=fgenesh2_kg.1__110__AT1G01200.1;pid=470156;prot=eq;tid=470156 + scaffold_1 No
AT1G01200 ath RAB GTPase homolog A3 (RABA3); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, nucleus, cell plate; EXPRESSED IN: lateral root cap, hypocotyl, root, flower, epidermis; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 27164 Blast hits to 27137 proteins in 734 species: Archae - 19; Bacteria - 134; Metazoa - 14292; Fungi - 3779; Plants - 3194; Viruses - 20; Other Eukaryotes - 5726 (source: NCBI BLink).;RAB GTPase homolog A3 transcript=eq;prot=eq; - 1 No
CP00096G00680 cpa name=evm.TU.supercontig_96.68;pid=evm.TU.supercontig_96.68;prot=eq;transcript=eq + supercontig_96 No
FV7G04830 fve Ras-related protein Rab11D (similar to) transcript=eq;prot=eq;pid=gene18667 - LG7 No
GM03G42030 gma 03 pid=16254206;transcript=eq;prot=eq;name=Glyma03g42030.1 + Gm03 No
GM07G05860 gma 07 pid=16266340;transcript=eq;prot=eq;name=Glyma07g05860.1 - Gm07 No
GM16G02460 gma 16 pid=16301218;transcript=eq;prot=eq;name=Glyma16g02460.1 - Gm16 No
GM19G44730 gma 19 pid=16314953;transcript=eq;prot=eq;name=Glyma19g44730.1 + Gm19 No
LJ1G057040 lja partial;prot=eq;transcript=eq;scaffold=CM0105;name=chr1.CM0105.260.nd + chr1 No
MD00G045090 mdo transcript=eq;prot=eq;pid=MDP0000321763;tid=MDP0000321763;contig=MDC001906.214 + MDC001906.214 No
MD07G013490 mdo transcript=eq;prot=eq;pid=MDP0000134679;tid=MDP0000134679;contig=MDC002561.365 + 7 No
ME03581G00430 mes PACid=17975564;RNAname=cassava4.1_015537m;GeneName=cassava4.1_015537m.g;transcript=eq;prot=eq - scaffold03581 No
MT7G117910 mtr Ras-related GTP-binding protein (Fragment) (AHRD V1 *-** Q0WNE9_ARATH); contains Interpro domain(s) IPR015595 Rab11-related transcript=eq;prot=eq;pid=Medtr7g117910.1; + 7 No
MT8G027220 mtr Ras-related protein Rab-11A (AHRD V1 ***- Q5ZJN2); contains Interpro domain(s) IPR015595 Rab11-related transcript=eq;prot=eq;pid=Medtr8g027220.1; + 8 No
OS09G35860 osa ras%2Drelated protein, putative, expressed transcript=eq;prot=eq; + 9 No
OSINDICA_09G28140 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC029388; + Chr09 No
PT14G09580 ptr PACid=17338654;name=POPTR_0014s09770;alias=pt036083m,gw1.XIV.1826.1; transcript=eq;prot=eq;protein_id=17338654; + scaffold_14 No
RC28014G00010 rco name=28014.m000111;gene=28014.t000001;note=28014.t000001;transcript=eq;prot=eq + 28014 No
SB02G030540 sbi 2 prot=eq;pid=5051505;tid=5051505 + chr_2 No
TC01G034070 tca RNAname=Tc01_t034070;GeneName=Tc01_g034070;transcript=eq;prot=eq - Tc01 No
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