Sub-family  

Parent family
HOM000095
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (1 gene)
mes
Manihot esculenta (3 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)



The gene family ORTHO007537 has 23 genes in 11 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT1G64260 ath MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64255.1); Has 1329 Blast hits to 1275 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1325; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;MuDR family transposase transcript=eq;prot=eq; + 1 No
BD1G23870 bdi zinc ion binding (Blast2GO) pid=Bradi1g23870.1;tid=Bradi1g23870.1;GeneName=Bradi1g23870;transcript=eq;prot=eq + Bd1 No
BD2G02790 bdi zinc ion binding (Blast2GO) pid=Bradi2g02790.1;tid=Bradi2g02790.1;GeneName=Bradi2g02790;transcript=eq;prot=eq + Bd2 No
BD2G19940 bdi zinc ion binding (Blast2GO) pid=Bradi2g19940.1;tid=Bradi2g19940.1;GeneName=Bradi2g19940;transcript=eq;prot=eq + Bd2 No
CP00020G00740 cpa name=evm.TU.supercontig_20.74;pid=evm.TU.supercontig_20.74;prot=eq;transcript=eq + supercontig_20 No
CP00123G00290 cpa name=evm.TU.supercontig_123.29;pid=evm.TU.supercontig_123.29;prot=eq;transcript=eq - supercontig_123 No
FV0G25870 fve Urease accessory protein ureE (probable) transcript=eq;prot=eq;pid=gene16596 - scf0513168 No
FV0G27410 fve F-box protein At2g02240 (probable) transcript=eq;prot=eq;pid=gene16744 + scf0513168 No
FV2G03090 fve Oxysterol-binding protein 5 (OSBPe) (probable) transcript=eq;prot=eq;pid=gene24706 + LG2 No
FV2G08330 fve Golgin subfamily A member 3 (GCP170) (probable) transcript=eq;prot=eq;pid=gene08222 - LG2 No
GM03G40850 gma 03 pid=16254061;transcript=eq;prot=eq;name=Glyma03g40850.1 - Gm03 No
ME01543G00050 mes PACid=17989821;RNAname=cassava4.1_004319m;GeneName=cassava4.1_004319m.g;transcript=ne;prot=eq - scaffold01543 No
ME02264G00630 mes PACid=17993297;RNAname=cassava4.1_004223m;GeneName=cassava4.1_004223m.g;transcript=ne;prot=eq + scaffold02264 No
ME03614G03180 mes PACid=17966124;RNAname=cassava4.1_002271m;GeneName=cassava4.1_002271m.g;transcript=ne;prot=eq + scaffold03614 No
OSINDICA_12G28510 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC045105; + Chr12 No
PP00118G00580 ppa NULL name=e_gw1.118.35.1,pid=135295,prot=eq,tid=135295 - scaffold_118 No
PT09G08370 ptr PACid=17309965;name=POPTR_0009s08560;alias=pt004297m,fgenesh4_pm.C_LG_IX000390; transcript=eq;prot=eq;protein_id=17309965; + scaffold_9 No
PT13G03860 ptr PACid=17331589;name=POPTR_0013s04050;alias=pt044174m; transcript=eq;prot=eq;protein_id=17331589; - scaffold_13 No
PT13G07760 ptr PACid=17336246;name=POPTR_0013s07950;alias=pt044249m,grail3.0087000801; transcript=eq;prot=eq;protein_id=17336246; + scaffold_13 No
PT19G07170 ptr PACid=17330050;name=POPTR_0019s08310;alias=pt009794m,eugene3.00190558; transcript=eq;prot=eq;protein_id=17330050; - scaffold_19 No
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