Sub-family  

Parent family
HOM000471
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO007441 has 23 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G26420 aly name=fgenesh2_kg.7__2645__AT4G16640.1;pid=493212;prot=eq;tid=493212 - scaffold_7 No
AT4G16640 ath Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT2G45040.1); Has 2701 Blast hits to 2501 proteins in 212 species: Archae - 6; Bacteria - 141; Metazoa - 2219; Fungi - 5; Plants - 183; Viruses - 44; Other Eukaryotes - 103 (source: NCBI BLink).;Matrixin family protein transcript=eq;prot=eq; - 4 No
BD3G33217 bdi pid=Bradi3g33217.1;tid=Bradi3g33217.1;GeneName=Bradi3g33217;transcript=eq;prot=eq - Bd3 No
CP00029G01660 cpa name=evm.TU.supercontig_29.166;pid=evm.TU.supercontig_29.166;prot=eq;transcript=eq - supercontig_29 No
FV5G14730 fve Metalloendoproteinase 1, Precursor (probable) transcript=eq;prot=eq;pid=gene08918 + LG5 No
GM01G41750 gma 01 pid=16245976;transcript=eq;prot=eq;name=Glyma01g41750.1 + Gm01 No
GM11G03630 gma 11 pid=16282563;transcript=eq;prot=eq;name=Glyma11g03630.1 - Gm11 No
MD04G003640 mdo transcript=eq;prot=eq;pid=MDP0000306688;tid=MDP0000306688;contig=MDC017972.421 + 4 No
MD06G006020 mdo transcript=eq;prot=eq;pid=MDP0000302555;tid=MDP0000302555;contig=MDC017972.422 - 6 No
ME11341G00150 mes PACid=17978813;RNAname=cassava4.1_023901m;GeneName=cassava4.1_023901m.g;transcript=eq;prot=eq - scaffold11341 No
MT5G012680 mtr Matrix metalloproteinase-28 (AHRD V1 ***- Q9H239); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin transcript=eq;prot=eq;pid=Medtr5g012680.1; - 5 No
OS10G40830 osa metalloendoproteinase 1 precursor, putative, expressed transcript=eq;prot=eq; - 10 No
OSINDICA_10G31190 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC044611; - Chr10 No
PP00252G00130 ppa NULL name=gw1.252.48.1,pid=45441,prot=eq,tid=45441 - scaffold_252 No
PT00G03600 ptr PACid=17313985;name=POPTR_0547s00200;alias=pt001711m; transcript=eq;prot=eq;protein_id=17313985; + scaffold_547 No
PT01G15570 ptr PACid=17315549;name=POPTR_0001s15760;alias=pt039042m,eugene3.00290049,Pt-MMP.15; transcript=eq;prot=eq;protein_id=17315549; + scaffold_1 No
PT03G06560 ptr PACid=17342840;name=POPTR_0003s07510;alias=pt023743m; transcript=eq;prot=eq;protein_id=17342840; - scaffold_3 No
RC28619G00010 rco name=28619.m000044;gene=28619.t000001;note=28619.t000001;transcript=eq;prot=eq + 28619 No
SB01G029150 sbi 1 prot=eq;pid=5049072;tid=5049072 + chr_1 No
SM00040G00430 smo proteinId=110370;transcriptId=110370;name=e_gw1.40.496.1;transcript=eq;prot=eq + scaffold_40 No
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