Sub-family  

Parent family
HOM000013
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO007397 has 23 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G04940 aly name=fgenesh2_kg.7__488__AT4G35840.1;pid=491055;prot=eq;tid=491055 - scaffold_7 No
AT4G35840 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 8964 Blast hits to 8940 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 2132; Fungi - 649; Plants - 5031; Viruses - 28; Other Eukaryotes - 1122 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 4 No
BD1G30190 bdi RING, subfamily zinc finger, C3HC4 type, domain containing protein pid=Bradi1g30190.1;tid=Bradi1g30190.1;GeneName=Bradi1g30190;transcript=eq;prot=eq + Bd1 No
BD3G32470 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi3g32470.2;tid=Bradi3g32470.2;GeneName=Bradi3g32470;transcript=eq;prot=eq + Bd3 No
CP00006G03040 cpa name=evm.TU.supercontig_6.305;pid=evm.TU.supercontig_6.305;prot=eq;transcript=eq - supercontig_6 No
FV1G12980 fve RING-H2 finger protein ATL4M (putative) transcript=eq;prot=eq;pid=gene14542 + LG1 No
GM01G36760 gma 01 pid=16245398;transcript=eq;prot=eq;name=Glyma01g36760.1 + Gm01 No
GM11G08540 gma 11 pid=16283138;transcript=eq;prot=eq;name=Glyma11g08540.1 - Gm11 No
LJ2G022270 lja prot=eq;transcript=eq;scaffold=CM0695;name=chr2.CM0695.110.nd + chr2 No
MD15G017600 mdo transcript=eq;prot=eq;pid=MDP0000150589;tid=MDP0000150589;contig=MDC010224.340 + 15 No
ME06512G01570 mes PACid=17966368;RNAname=cassava4.1_015225m;GeneName=cassava4.1_015225m.g;transcript=eq;prot=eq - scaffold06512 No
ME07520G03030 mes PACid=17979253;RNAname=cassava4.1_015188m;GeneName=cassava4.1_015188m.g;transcript=eq;prot=eq - scaffold07520 No
MT5G022920 mtr RING-H2 finger protein ATL4M (AHRD V1 ***- Q8GT75); contains Interpro domain(s) IPR001841 Zinc finger, RING-type transcript=eq;prot=eq;pid=Medtr5g022920.1; - 5 No
OS10G39770 osa zinc finger, C3HC4 type, domain containing protein, expressed transcript=eq;prot=eq; + 10 No
OSINDICA_10G30080 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC031591; + Chr10 No
PT05G10810 ptr PACid=17307751;name=POPTR_0005s11000;alias=pt033752m,Pt-ZF1.1,fgenesh4_pm.C_scaffold_57000011; transcript=eq;prot=eq;protein_id=17307751; + scaffold_5 No
PT07G08610 ptr PACid=17336874;name=POPTR_0007s09180;alias=pt025779m,gw1.181.48.1; transcript=eq;prot=eq;protein_id=17336874; + scaffold_7 No
RC29784G00040 rco name=29784.m000358;gene=29784.t000004;note=29784.t000004;transcript=eq;prot=eq - 29784 No
SB01G030190 sbi 1 prot=eq;pid=5049130;tid=5049130 - chr_1 No
TC01G001110 tca RNAname=Tc01_t001110;GeneName=Tc01_g001110;transcript=eq;prot=eq + Tc01 No
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