Sub-family  

Parent family
HOM000004
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family ORTHO007156 has 23 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G37360 aly name=fgenesh2_kg.3__3259__AT2G16750.1;pid=480558;prot=eq;tid=480558 + scaffold_3 No
AT2G16750 ath Protein kinase protein with adenine nucleotide alpha hydrolases-like domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G35030.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Protein kinase protein with adenine nucleotide alpha hydrolases-like domain transcript=eq;prot=eq; + 2 No
BD1G68487 bdi pid=Bradi1g68487.1;tid=Bradi1g68487.1;GeneName=Bradi1g68487;transcript=eq;prot=eq + Bd1 No
CP00037G01330 cpa name=evm.TU.supercontig_37.133;pid=evm.TU.supercontig_37.133;prot=eq;transcript=eq - supercontig_37 No
FV2G07380 fve Serine/threonine-protein kinase-like protein ACR4 (AtCR4), Precursor (probable) transcript=eq;prot=eq;pid=gene07548 + LG2 No
GM11G11530 gma 11 pid=16283513;transcript=eq;prot=eq;name=Glyma11g11530.1 + Gm11 No
GM12G03680 gma 12 pid=16286276;transcript=eq;prot=eq;name=Glyma12g03680.1 + Gm12 No
LJ1G033510 lja partial;prot=eq;transcript=eq;scaffold=CM0017;name=chr1.CM0017.720.nd + chr1 No
MD00G025390 mdo transcript=eq;prot=eq;pid=MDP0000266029;tid=MDP0000266029;contig=MDC001062.514 - MDC001062.514 No
MD00G272730 mdo transcript=eq;prot=eq;pid=MDP0000241023;tid=MDP0000241023;contig=MDC011665.405 + MDC011665.405 No
MD08G007630 mdo transcript=eq;prot=eq;pid=MDP0000230389;tid=MDP0000230389;contig=MDC011665.419 - 8 No
ME01604G00030 mes PACid=17990886;RNAname=cassava4.1_021167m;GeneName=cassava4.1_021167m.g;transcript=eq;prot=eq - scaffold01604 No
ME11821G00100 mes PACid=17977495;RNAname=cassava4.1_022526m;GeneName=cassava4.1_022526m.g;transcript=eq;prot=eq - scaffold11821 No
MT3G117850 mtr Receptor-like protein kinase At3g21340 (AHRD V1 *-*- Q9LIG2); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase transcript=eq;prot=eq;pid=Medtr3g117850.1; - 3 No
MT4G073140 mtr Wall-associated receptor kinase-like 10 (AHRD V1 *--- Q8VYA3); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase transcript=eq;prot=eq;pid=Medtr4g073140.1; - 4 No
OS03G13820 osa protein kinase family protein, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G12240 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC005774; - Chr03 No
PT04G17150 ptr PACid=17307095;name=POPTR_0004s18100;alias=pt006041m,fgenesh4_pm.C_LG_IV000545; transcript=eq;prot=eq;protein_id=17307095; + scaffold_4 No
PT09G13520 ptr PACid=17313468;name=POPTR_0009s13710;alias=pt004268m,gw1.IX.1169.1; transcript=eq;prot=eq;protein_id=17313468; + scaffold_9 No
RC28095G00050 rco name=28095.m000098;gene=28095.t000005;note=28095.t000005;transcript=eq;prot=eq - 28095 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier