Sub-family  

Parent family
HOM004485
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO007068 has 23 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G29440 aly name=scaffold_203032.1;pid=895958;prot=eq;tid=927471 + scaffold_2 No
AT1G80360 ath Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase (TAIR:AT2G22250.1); Has 39039 Blast hits to 39038 proteins in 3030 species: Archae - 1022; Bacteria - 27880; Metazoa - 604; Fungi - 771; Plants - 1310; Viruses - 0; Other Eukaryotes - 7452 (source: NCBI BLink).;Pyridoxal phosphate (PLP)-dependent transferases superfamily protein transcript=eq;prot=eq; - 1 No
BD2G04860 bdi pid=Bradi2g04860.2;tid=Bradi2g04860.2;GeneName=Bradi2g04860;transcript=eq;prot=eq - Bd2 No
CP00018G01050 cpa name=evm.TU.supercontig_18.105;pid=evm.TU.supercontig_18.105;prot=eq;transcript=eq + supercontig_18 No
CR01G10720 cre name=Chlre2_kg.scaffold_1000747;pid=146923;prot=eq;tid=146923;transcript=eq - chromosome_1 No
FV6G16230 fve Aspartate aminotransferase (AspAT) (probable) transcript=eq;prot=eq;pid=gene05545 + LG6 No
GM13G43830 gma 13 pid=16293681;transcript=eq;prot=eq;name=Glyma13g43830.1 + Gm13 No
GM15G01520 gma 15 pid=16297248;transcript=eq;prot=eq;name=Glyma15g01520.1 - Gm15 No
LJ3G021570 lja prot=eq;transcript=eq;scaffold=CM0226;name=chr3.CM0226.250.nc + chr3 No
MD00G481300 mdo transcript=eq;prot=eq;pid=MDP0000310976;tid=MDP0000310976;contig=MDC022459.181 - MDC022459.181 No
MD08G005570 mdo transcript=eq;prot=eq;pid=MDP0000183299;tid=MDP0000183299;contig=MDC006795.357 + 8 No
ME02196G00030 mes PACid=17983010;RNAname=cassava4.1_009235m;GeneName=cassava4.1_009235m.g;transcript=eq;prot=eq - scaffold02196 No
ME02853G00240 mes PACid=17959769;RNAname=cassava4.1_029062m;GeneName=cassava4.1_029062m.g;transcript=eq;prot=eq - scaffold02853 No
OS01G08270 osa aminotransferase, classes I and II, domain containing protein, expressed transcript=eq;prot=eq; - 1 No
OSINDICA_01G07670 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC000529; - Chr01 No
PP00009G01870 ppa NULL name=e_gw1.9.292.1,pid=114138,prot=eq,tid=114138 - scaffold_9 No
PT01G17530 ptr PACid=17330776;name=POPTR_0001s17720;alias=pt038826m,estExt_fgenesh4_pg.C_LG_I1115; transcript=eq;prot=eq;protein_id=17330776; - scaffold_1 No
RC29841G00190 rco name=29841.m002756;gene=29841.t000020;note=29841.t000020;transcript=eq;prot=eq + 29841 No
TC00G023900 tca RNAname=Tc00_t023900;GeneName=Tc00_g023900;transcript=eq;prot=eq - Tc00 No
VC00010G01020 vca name=e_gw1.10.195.1;pid=58256;prot=eq;tid=58256 - scaffold_10 No
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