Sub-family  

Parent family
HOM000001
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO006906 has 23 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09090 aly name=fgenesh2_kg.1__986__AT1G09410.1;pid=471032;prot=eq;tid=471032 + scaffold_1 No
AL1G53250 aly name=fgenesh1_pg.C_scaffold_1004429;pid=337864;prot=eq;tid=337864 + scaffold_1 No
AT1G09410 ath pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G56690.1); Has 49310 Blast hits to 14061 proteins in 238 species: Archae - 0; Bacteria - 33; Metazoa - 32; Fungi - 36; Plants - 48709; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).;pentatricopeptide (PPR) repeat-containing protein transcript=eq;prot=eq; + 1 No
AT1G56690 ath Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 51447 Blast hits to 14439 proteins in 253 species: Archae - 0; Bacteria - 17; Metazoa - 29; Fungi - 107; Plants - 50657; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; + 1 No
BD1G64080 bdi pid=Bradi1g64080.1;tid=Bradi1g64080.1;GeneName=Bradi1g64080;transcript=eq;prot=eq - Bd1 No
CP00048G01990 cpa name=evm.TU.supercontig_48.199;pid=evm.TU.supercontig_48.199;prot=eq;transcript=eq + supercontig_48 No
FV6G03210 fve Pentatricopeptide repeat-containing protein At1g56690, mitochondrial, Precursor (putative) transcript=eq;prot=eq;pid=gene00287 + LG6 No
GM09G40850 gma 09 pid=16277914;transcript=eq;prot=eq;name=Glyma09g40850.1 - Gm09 No
LJ1G025740 lja prot=eq;transcript=eq;scaffold=LjT09E07;name=chr1.LjT09E07.90.nc + chr1 No
MD00G318990 mdo transcript=eq;prot=eq;pid=MDP0000259461;tid=MDP0000259461;contig=MDC013510.439 + MDC013510.439 No
MD07G010010 mdo transcript=eq;prot=eq;pid=MDP0000275623;tid=MDP0000275623;contig=MDC003652.401 - 7 No
MD08G022980 mdo transcript=eq;prot=eq;pid=MDP0000274039;tid=MDP0000274039;contig=MDC003652.391 + 8 No
ME10305G00600 mes PACid=17973871;RNAname=cassava4.1_003564m;GeneName=cassava4.1_003564m.g;transcript=eq;prot=eq + scaffold10305 No
MT7G074040 mtr Pentatricopeptide repeat-containing protein At1g09410 (AHRD V1 ***- Q56XI1); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat transcript=eq;prot=eq;pid=Medtr7g074040.1; + 7 No
OS03G20190 osa pentatricopeptide, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G19200 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC006285; + Chr03 No
PT05G00610 ptr PACid=17338411;name=POPTR_0005s00800;alias=pt032471m,fgenesh4_pg.C_scaffold_131000056; transcript=eq;prot=eq;protein_id=17338411; - scaffold_5 No
PT13G00490 ptr PACid=17303466;name=POPTR_0013s00680;alias=pt030434m; transcript=eq;prot=eq;protein_id=17303466; - scaffold_13 No
RC30128G03420 rco name=30128.m008954;gene=30128.t000415;note=30128.t000415;transcript=eq;prot=eq + 30128 No
SB01G037070 sbi 1 prot=eq;pid=5030019;tid=5030019 - chr_1 No
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