Sub-family 
- Id
- ORTHO006906
- Method
- BLASTP E_value=1e-05 hits=500 ORTHOMCL I=2
- Sequences
- Parent family
- HOM000001
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (1 gene)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (1 gene)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family ORTHO006906 has 23 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : ORTHO006906
Page 1 of 2, showing 20 records out of 23 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G09090 | aly | name=fgenesh2_kg.1__986__AT1G09410.1;pid=471032;prot=eq;tid=471032 | + | scaffold_1 | No | |
| AL1G53250 | aly | name=fgenesh1_pg.C_scaffold_1004429;pid=337864;prot=eq;tid=337864 | + | scaffold_1 | No | |
| AT1G09410 | ath | pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G56690.1); Has 49310 Blast hits to 14061 proteins in 238 species: Archae - 0; Bacteria - 33; Metazoa - 32; Fungi - 36; Plants - 48709; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).;pentatricopeptide (PPR) repeat-containing protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G56690 | ath | Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 51447 Blast hits to 14439 proteins in 253 species: Archae - 0; Bacteria - 17; Metazoa - 29; Fungi - 107; Plants - 50657; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein | transcript=eq;prot=eq; | + | 1 | No |
| BD1G64080 | bdi | pid=Bradi1g64080.1;tid=Bradi1g64080.1;GeneName=Bradi1g64080;transcript=eq;prot=eq | - | Bd1 | No | |
| CP00048G01990 | cpa | name=evm.TU.supercontig_48.199;pid=evm.TU.supercontig_48.199;prot=eq;transcript=eq | + | supercontig_48 | No | |
| FV6G03210 | fve | Pentatricopeptide repeat-containing protein At1g56690, mitochondrial, Precursor (putative) | transcript=eq;prot=eq;pid=gene00287 | + | LG6 | No |
| GM09G40850 | gma | 09 | pid=16277914;transcript=eq;prot=eq;name=Glyma09g40850.1 | - | Gm09 | No |
| LJ1G025740 | lja | prot=eq;transcript=eq;scaffold=LjT09E07;name=chr1.LjT09E07.90.nc | + | chr1 | No | |
| MD00G318990 | mdo | transcript=eq;prot=eq;pid=MDP0000259461;tid=MDP0000259461;contig=MDC013510.439 | + | MDC013510.439 | No | |
| MD07G010010 | mdo | transcript=eq;prot=eq;pid=MDP0000275623;tid=MDP0000275623;contig=MDC003652.401 | - | 7 | No | |
| MD08G022980 | mdo | transcript=eq;prot=eq;pid=MDP0000274039;tid=MDP0000274039;contig=MDC003652.391 | + | 8 | No | |
| ME10305G00600 | mes | PACid=17973871;RNAname=cassava4.1_003564m;GeneName=cassava4.1_003564m.g;transcript=eq;prot=eq | + | scaffold10305 | No | |
| MT7G074040 | mtr | Pentatricopeptide repeat-containing protein At1g09410 (AHRD V1 ***- Q56XI1); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat | transcript=eq;prot=eq;pid=Medtr7g074040.1; | + | 7 | No |
| OS03G20190 | osa | pentatricopeptide, putative, expressed | transcript=eq;prot=eq; | + | 3 | No |
| OSINDICA_03G19200 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC006285; | + | Chr03 | No |
| PT05G00610 | ptr | PACid=17338411;name=POPTR_0005s00800;alias=pt032471m,fgenesh4_pg.C_scaffold_131000056; | transcript=eq;prot=eq;protein_id=17338411; | - | scaffold_5 | No |
| PT13G00490 | ptr | PACid=17303466;name=POPTR_0013s00680;alias=pt030434m; | transcript=eq;prot=eq;protein_id=17303466; | - | scaffold_13 | No |
| RC30128G03420 | rco | name=30128.m008954;gene=30128.t000415;note=30128.t000415;transcript=eq;prot=eq | + | 30128 | No | |
| SB01G037070 | sbi | 1 | prot=eq;pid=5030019;tid=5030019 | - | chr_1 | No |