Sub-family  

Parent family
HOM000079
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO006789 has 24 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G21820 aly name=fgenesh2_kg.8__1541__AT5G56340.1;pid=495725;prot=eq;tid=495725 + scaffold_8 No
AT5G56340 ath ATCRT1; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 5 No
BD1G04180 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi1g04180.1;tid=Bradi1g04180.1;GeneName=Bradi1g04180;transcript=eq;prot=eq - Bd1 No
CP00119G00240 cpa name=evm.TU.supercontig_119.24;pid=evm.TU.supercontig_119.24;prot=eq;transcript=eq + supercontig_119 No
FV3G35820 fve E3 ubiquitin-protein ligase CIP8 (probable) transcript=eq;prot=eq;pid=gene01583 + LG3 No
GM18G00300 gma 18 pid=16307435;transcript=eq;prot=eq;name=Glyma18g00300.1 - Gm18 No
MD00G054720 mdo transcript=eq;prot=eq;pid=MDP0000269081;tid=MDP0000269081;contig=MDC002271.451 + MDC002271.451 No
MD00G054740 mdo transcript=eq;prot=eq;pid=MDP0000461884;tid=MDP0000461884;contig=MDC002271.457 - MDC002271.457 No
MD00G340850 mdo transcript=eq;prot=eq;pid=MDP0000472408;tid=MDP0000472408;contig=MDC015218.95 + MDC015218.95 No
MD00G405550 mdo transcript=eq;prot=eq;pid=MDP0000300854;tid=MDP0000300854;contig=MDC018424.209 - MDC018424.209 No
MD03G000580 mdo transcript=eq;prot=eq;pid=MDP0000321891;tid=MDP0000321891;contig=MDC018424.297 + 3 No
ME06582G01000 mes PACid=17971970;RNAname=cassava4.1_009265m;GeneName=cassava4.1_009285m.g;transcript=ne;prot=eq + scaffold06582 No
ME11224G00040 mes PACid=17981332;RNAname=cassava4.1_009387m;GeneName=cassava4.1_009387m.g;transcript=ne;prot=eq + scaffold11224 No
MRCC299_11G00860 mrcc299 name=EuGene.1100010088;pid=62302;prot=eq;tid=62302;transcript=eq - Chr_11 No
MT3G083480 mtr RING finger protein 44 (AHRD V1 *--- Q4V7B8); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type transcript=eq;prot=eq;pid=Medtr3g083480.1; + 3 No
OS03G59760 osa RING finger protein 126, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G57110 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC038419; + Chr03 No
PT01G03690 ptr PACid=17324307;name=POPTR_0001s03880;alias=pt038919m; transcript=eq;prot=eq;protein_id=17324307; + scaffold_1 No
PT03G19830 ptr PACid=17321254;name=POPTR_0003s20780;alias=pt023422m,gw1.III.148.1; transcript=eq;prot=eq;protein_id=17321254; + scaffold_3 No
RC28842G00210 rco name=28842.m000926;gene=28842.t000021;note=28842.t000021;transcript=eq;prot=eq + 28842 No
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