Sub-family  

Parent family
HOM000160
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family ORTHO006776 has 24 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G17790 aly name=fgenesh2_kg.8__1208__AT5G53190.1;pid=495392;prot=eq;tid=495392 - scaffold_8 No
AT5G53190 ath Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT1G21460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Nodulin MtN3 family protein transcript=eq;prot=eq; - 5 No
BD2G32230 bdi pid=Bradi2g32230.1;tid=Bradi2g32230.1;GeneName=Bradi2g32230;transcript=eq;prot=eq + Bd2 No
CP00003G00570 cpa name=evm.TU.supercontig_3.57;pid=evm.TU.supercontig_3.57;prot=eq;transcript=eq + supercontig_3 No
FV7G36880 fve Protein RUPTURED POLLEN GRAIN 1 (probable) transcript=eq;prot=eq;pid=gene13106 - LG7 No
GM06G13110 gma 06 pid=16262757;transcript=eq;prot=eq;name=Glyma06g13110.1 + Gm06 No
MD00G395450 mdo transcript=eq;prot=eq;pid=MDP0000207521;tid=MDP0000207521;contig=MDC017958.140 + MDC017958.140 No
ME00341G00230 mes PACid=17960865;RNAname=cassava4.1_022559m;GeneName=cassava4.1_022559m.g;transcript=eq;prot=eq - scaffold00341 No
ME06089G00240 mes PACid=17989947;RNAname=cassava4.1_026477m;GeneName=cassava4.1_026477m.g;transcript=eq;prot=eq - scaffold06089 No
MT3G090940 mtr Protein RUPTURED POLLEN GRAIN 1 (AHRD V1 ***- Q8LFH5); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue transcript=eq;prot=eq;pid=Medtr3g090940.1; + 3 No
MT3G090950 mtr RAG1-activating protein 1 homolog (AHRD V1 ***- O45102); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue transcript=eq;prot=eq;pid=Medtr3g090950.1; + 3 No
OS01G12130 osa nodulin MtN3 family protein, putative, expressed transcript=eq;prot=eq; - 1 No
OS05G12320 osa nodulin MtN3 family protein, putative, expressed transcript=eq;prot=eq; + 5 No
OSINDICA_01G11170 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC000778; - Chr01 No
OSINDICA_05G10580 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC020076; - Chr05 No
PT12G01210 ptr PACid=17306477;name=POPTR_0012s01400;alias=pt016203m; transcript=eq;prot=eq;protein_id=17306477; - scaffold_12 No
PT15G02110 ptr PACid=17327557;name=POPTR_0015s02300;alias=pt000990m; transcript=eq;prot=eq;protein_id=17327557; - scaffold_15 No
RC30169G03000 rco name=30169.m006529;gene=30169.t000306;note=30169.t000306;transcript=eq;prot=eq - 30169 No
SB03G001520 sbi 3 prot=eq;pid=5035006;tid=5035006 + chr_3 No
SB09G006950 sbi 9 prot=eq;pid=5046123;tid=5046123 - chr_9 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier