Sub-family  

Parent family
HOM000556
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family ORTHO006713 has 24 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 24 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G14730 aly name=fgenesh2_kg.7__1503__AT4G27280.1;pid=492070;prot=eq;tid=492070 + scaffold_7 No
AT4G27280 ath Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: pinoid-binding protein 1 (TAIR:AT5G54490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Calcium-binding EF-hand family protein transcript=eq;prot=eq; - 4 No
BD1G33050 bdi myosin heavy chain binding (Blast2GO) pid=Bradi1g33050.1;tid=Bradi1g33050.1;GeneName=Bradi1g33050;transcript=eq;prot=eq + Bd1 No
CP00012G00050 cpa name=evm.TU.supercontig_12.5;pid=evm.TU.supercontig_12.5;prot=eq;transcript=eq - supercontig_12 No
FV3G27430 fve Centrin-2 (probable) transcript=eq;prot=eq;pid=gene25026 - LG3 No
GM06G40330 gma 06 pid=16264733;transcript=eq;prot=eq;name=Glyma06g40330.1 + Gm06 No
GM12G20830 gma 12 pid=16287873;transcript=eq;prot=eq;name=Glyma12g20830.1 - Gm12 No
GM12G34580 gma 12 pid=16288884;transcript=eq;prot=eq;name=Glyma12g34580.1 - Gm12 No
GM13G35950 gma 13 pid=16292769;transcript=eq;prot=eq;name=Glyma13g35950.1 + Gm13 No
LJ0G202860 lja prot=eq;transcript=eq;scaffold=LjSGA_064987;name=LjSGA_064987.2 + LjSGA_064987 No
LJ0G441720 lja prot=eq;transcript=eq;scaffold=LjT44J06;name=LjT44J06.140.nd - chr0 No
MD14G006680 mdo transcript=eq;prot=eq;pid=MDP0000791177;tid=MDP0000791177;contig=MDC015329.224 + 14 No
ME03423G00050 mes PACid=17975533;RNAname=cassava4.1_019335m;GeneName=cassava4.1_019335m.g;transcript=eq;prot=eq + scaffold03423 No
ME11388G00230 mes PACid=17989244;RNAname=cassava4.1_019346m;GeneName=cassava4.1_019346m.g;transcript=eq;prot=eq + scaffold11388 No
MT2G081580 mtr Centrin-2 (AHRD V1 ***- Q9R1K9); contains Interpro domain(s) IPR018247 EF-HAND 1 IPR018249 EF-HAND 2 transcript=eq;prot=eq;pid=Medtr2g081580.1; + 2 No
OS06G46950 osa EF hand family protein, putative, expressed transcript=eq;prot=eq; + 6 No
OSINDICA_06G43050 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC039261; + Chr06 No
PT01G41320 ptr PACid=17335347;name=POPTR_0001s42270;alias=pt040161m; transcript=eq;prot=eq;protein_id=17335347; + scaffold_1 No
PT11G12520 ptr PACid=17327295;name=POPTR_0011s13280;alias=pt014668m; transcript=eq;prot=eq;protein_id=17327295; + scaffold_11 No
RC30014G00080 rco name=30014.m000444;gene=30014.t000008;note=30014.t000008;transcript=eq;prot=eq - 30014 No
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